reconner: Reconstruction Helper for recon from Freesurfer
In muschellij2/freesurfer: Wrapper Functions for 'Freesurfer'
reconner R Documentation
Reconstruction Helper for recon from Freesurfer
Description
Wrapper for the recon-all function in Freesurfer
Usage
reconner(
infile = NULL,
outdir = NULL,
subjid = NULL,
verbose = TRUE,
opts = "-all",
force = FALSE
)
Arguments
infile
Input filename (dcm or nii)
outdir
Output directory
subjid
subject id
verbose
print diagnostic messages
opts
Additional options
force
Force running of the reconstruction
Value
Result of system
Note
If you set infile = NULL, then you can omit the
-i flag in recon-all
muschellij2/freesurfer documentation built on July 3, 2025, 6:26 p.m.
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| reconner | R Documentation |
Reconstruction Helper for recon from Freesurfer
Description
Wrapper for the recon-all function in Freesurfer
Usage
reconner(
infile = NULL,
outdir = NULL,
subjid = NULL,
verbose = TRUE,
opts = "-all",
force = FALSE
)
Arguments
infile |
Input filename (dcm or nii) |
outdir |
Output directory |
subjid |
subject id |
verbose |
print diagnostic messages |
opts |
Additional options |
force |
Force running of the reconstruction |
Value
Result of system
Note
If you set infile = NULL, then you can omit the
-i flag in recon-all
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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