greedy: Greedy Registration with Affine

In muschellij2/greedyreg: Greedy Image Registration

Description

Registration from Greedy library

Usage

greedy(fixed, moving, affine = TRUE, dimension = 3,
  args.affine = list(niters = "200x200x200", omat = tempfile(fileext =
  ".mat"), metric = "NMI", dof = 12, opts = ""),
  args.greedy = list(initial_transform = args.affine$omat, niters =
  args.affine$niters, metric = args.affine$metric, warpfile = tempfile(fileext =
  ".nii.gz"), invwarpfile = tempfile(fileext = ".nii.gz"), opts = ""),
  verbose = TRUE, ...)

Arguments

fixed	Fixed image
moving	Moving Image to register to fixed image
affine	Should an affine registration be run before greedy?
dimension	Number of image dimension
args.affine	list of arguments for affine registration and greedy_affine
args.greedy	list of arguments for greedy registration and greedy_estimate
verbose	print diagnostic messages
...	additional arguments passed to greedy_apply, like interpolator

Value

List of output from all registrations and application

muschellij2/greedyreg documentation built on July 18, 2019, 7:29 a.m.