camino_voxelclassify: Wrapper for Camino 'voxelclassify' function

Description Usage Arguments

View source: R/camino_voxelclassify.R

Description

Performs the Camino voxelclassify function

Usage

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camino_voxelclassify(infile, scheme, outfile = NULL,
  outputdatatype = NULL, mask = NULL, bgthresh = NULL,
  csfthresh = NULL, order = 4, ftest = NULL, verbose = TRUE)

Arguments

infile

input filename

scheme

Scheme file

outfile

output filename

outputdatatype

Specifies the data type of the output image, only relevant if outfile is not specified The data type can be any of the following strings: "byte", "short", "int", "long", "float" or "double".

mask

Character or nifti to mask out background.

bgthresh

background threshold value. If mask is specified, this is overridden. Ignored if ftest is not specified.

csfthresh

CSF threshold value

order

Set the maximum even spherical harmonic order that will be considered by the program. Must be a positive even number. Default is 4.

ftest

Specifies the F-test thresholds for adopting higher order models. A threshold must be provided for every order between 0 and the maximum order. The program will not consider a higher order model unless the result of the F-test is smaller than the relevant threshold.

verbose

Print diagnostic messages


muschellij2/rcamino documentation built on Nov. 9, 2019, 3:51 a.m.