kmers: generate kmers

Description Usage Arguments Details Value Author(s)

View source: R/kmers.R

Description

generate all kmers of given length

Usage

1
kmers(k, alphabet = c("A", "C", "G", "T"))

Arguments

k

length

alphabet

default DNA bases

Details

generate all kmers of given length with middle nucleotide... TODO find a fast way to exclude reverse complement sequences

Value

DNAStringSet with all kmers

Author(s)

mvaniterson


mvaniterson/DNAshape documentation built on May 14, 2019, 8:35 a.m.