brapi_get_markerpositions: get /markerpositions

In mverouden/brapir-v2: Client to Access BrAPI Compliant Plant Breeding Databases

get /markerpositions

Description

Get marker position info

Usage

brapi_get_markerpositions(
  con = NULL,
  mapDbId = "",
  linkageGroupName = "",
  variantDbId = "",
  minPosition = as.integer(NA),
  maxPosition = as.integer(NA),
  page = 0,
  pageSize = 1000
)

Arguments

con	list; required: TRUE; BrAPI connection object
mapDbId	character; required: FALSE; unique database identifier of a map.
linkageGroupName	character; required: FALSE; The chromosome identifier or the generic linkage group identifier if the chromosome is not applicable.
variantDbId	character; required: FALSE; The unique database identifier for a marker.
minPosition	integer; required: FALSE; The minimum position.
maxPosition	integer; required: FALSE; The maximum position.
page	integer; required: FALSE; Used to request a specific page of data to be returned. The page indexing starts at 0 (the first page is page = 0). Default is 0.
pageSize	integer; required: FALSE; The size of the pages to be returned. Default is 1000.

Details

Get marker position information, based on Map, Linkage Group, and Marker Identifier.

Value

data.frame

Author(s)

Maikel Verouden

References

BrAPI SwaggerHub

See Also

Other brapi-genotyping: brapi_get_callsets_callSetDbId_calls(), brapi_get_callsets_callSetDbId(), brapi_get_callsets(), brapi_get_calls(), brapi_get_maps_mapDbId_linkagegroups(), brapi_get_maps_mapDbId(), brapi_get_maps(), brapi_get_references_referenceDbId_bases(), brapi_get_references_referenceDbId(), brapi_get_referencesets_referenceSetDbId(), brapi_get_referencesets(), brapi_get_references(), brapi_get_samples_sampleDbId(), brapi_get_samples(), brapi_get_search_calls_searchResultsDbId(), brapi_get_search_callsets_searchResultsDbId(), brapi_get_search_markerpositions_searchResultsDbId(), brapi_get_search_references_searchResultsDbId(), brapi_get_search_referencesets_searchResultsDbId(), brapi_get_search_samples_searchResultsDbId(), brapi_get_search_variants_searchResultsDbId(), brapi_get_search_variantsets_searchResultsDbId(), brapi_get_variants_variantDbId_calls(), brapi_get_variants_variantDbId(), brapi_get_variantsets_variantSetDbId_callsets(), brapi_get_variantsets_variantSetDbId_calls(), brapi_get_variantsets_variantSetDbId_variants(), brapi_get_variantsets_variantSetDbId(), brapi_get_variantsets(), brapi_get_variants(), brapi_get_vendor_orders_orderId_plates(), brapi_get_vendor_orders_orderId_results(), brapi_get_vendor_orders_orderId_status(), brapi_get_vendor_orders(), brapi_get_vendor_specifications(), brapi_post_samples(), brapi_post_search_callsets(), brapi_post_search_calls(), brapi_post_search_markerpositions(), brapi_post_search_referencesets(), brapi_post_search_references(), brapi_post_search_samples(), brapi_post_search_variantsets(), brapi_post_search_variants(), brapi_post_variantsets_extract(), brapi_put_samples_sampleDbId()

Other Genome Maps: brapi_get_maps_mapDbId_linkagegroups(), brapi_get_maps_mapDbId(), brapi_get_maps(), brapi_get_search_markerpositions_searchResultsDbId(), brapi_post_search_markerpositions()

Examples

## Not run: 
con <- brapi_db()$testserver
brapi_get_markerpositions(con = con)

## End(Not run)

mverouden/brapir-v2 documentation built on April 22, 2022, 9:24 a.m.