brapi_get_observationunits_table: get /observationunits/table

In mverouden/brapir-v2: Client to Access BrAPI Compliant Plant Breeding Databases

get /observationunits/table

Description

Get a list of Observations in a table format

Usage

brapi_get_observationunits_table(
  con = NULL,
  Accept = "application/json",
  observationUnitDbId = "",
  germplasmDbId = "",
  observationVariableDbId = "",
  studyDbId = "",
  locationDbId = "",
  trialDbId = "",
  programDbId = "",
  seasonDbId = "",
  observationLevel = ""
)

Arguments

con	list; required: TRUE; BrAPI connection object
Accept	character; required: TRUE; The requested content type which should be returned by the server; default: "application/json", other possible values: "text/csv" "text/tsv"
observationUnitDbId	character; required: FALSE; Unique observation unit database identifier to filter on.
germplasmDbId	character; required: FALSE; Unique germplasm (accession) identifier to filter on.
observationVariableDbId	character; required: FALSE; Unique observation variable identifier to filter on.
studyDbId	character; required: FALSE; Unique study database identifier to filter on.
locationDbId	character; required: FALSE; Unique location identifier, where the observations were collected.
trialDbId	character; required: FALSE; Unique trial identifier to filter on
programDbId	character; required: FALSE; Unique program database identifier to filter on.
seasonDbId	character; required: TRUE; The unique database identifier for a season, e.g. the year or Phenotyping campaign of a multi-annual study (trees, grape, ...). For backward compatibility it can be a string like '2012', '1957-2004'.
observationLevel	character; required: FALSE; The type of the observationUnit. Returns only the observation unit of the specified type; the parent levels ID can be accessed through observationUnitStructure.

Details

This service is designed to retrieve a table for observation values as a matrix of Observation Units and Observation Variables.

Value

data.frame

Author(s)

Maikel Verouden

References

BrAPI SwaggerHub

See Also

Other brapi-phenotyping: brapi_get_events(), brapi_get_images_imageDbId(), brapi_get_images(), brapi_get_methods_methodDbId(), brapi_get_methods(), brapi_get_observationlevels(), brapi_get_observations_observationDbId(), brapi_get_observations_table(), brapi_get_observations(), brapi_get_observationunits_observationUnitDbId(), brapi_get_observationunits(), brapi_get_ontologies(), brapi_get_scales_scaleDbId(), brapi_get_scales(), brapi_get_search_images_searchResultsDbId(), brapi_get_search_observations_searchResultsDbId(), brapi_get_search_observationunits_searchResultsDbId(), brapi_get_search_variables_searchResultsDbId(), brapi_get_traits_traitDbId(), brapi_get_traits(), brapi_get_variables_observationVariableDbId(), brapi_get_variables(), brapi_post_images(), brapi_post_methods(), brapi_post_observations(), brapi_post_observationunits(), brapi_post_scales(), brapi_post_search_images(), brapi_post_search_observations(), brapi_post_search_observationunits(), brapi_post_search_variables(), brapi_post_traits(), brapi_post_variables(), brapi_put_images_imageDbId_imagecontent(), brapi_put_images_imageDbId(), brapi_put_methods_methodDbId(), brapi_put_observations_observationDbId(), brapi_put_observationunits_observationUnitDbId(), brapi_put_scales_scaleDbId(), brapi_put_traits_traitDbId(), brapi_put_variables_observationVariableDbId()

Other Observation Units: brapi_get_observationlevels(), brapi_get_observationunits_observationUnitDbId(), brapi_get_observationunits(), brapi_get_search_observationunits_searchResultsDbId(), brapi_post_observationunits(), brapi_post_search_observationunits(), brapi_put_observationunits_observationUnitDbId()

Examples

## Not run: 
con <- brapi_db()$testserver
brapi_get_observationunits_table(con = con,
                                 Accept = "application/json")

## End(Not run)

mverouden/brapir-v2 documentation built on April 22, 2022, 9:24 a.m.