brapi_put_methods_methodDbId: put /methods/{methodDbId}

In mverouden/brapir: Client to Access BrAPI Compliant Plant Breeding Databases

put /methods/{methodDbId}

Description

Update an existing Method

Usage

brapi_put_methods_methodDbId(
  con = NULL,
  methodDbId = "",
  class = "",
  description = "",
  formula = "",
  methodName = "",
  ontologyReference = list(),
  reference = ""
)

Arguments

con	list; required: TRUE; BrAPI connection object
methodDbId	character; required: TRUE; Id of the method to update details of.; default: "".
class	character; required: FALSE; Method class (examples: "Measurement", "Counting", "Estimation", "Computation", etc.); default: "".
description	character; required: FALSE; Method description.; default: "".
formula	character; required: FALSE; For computational methods i.e., when the method consists in assessing the trait by computing measurements, write the generic formula used for the calculation; default: "".
methodName	character; required: FALSE; Human readable name for the method; default: "".
ontologyReference	list; required: FALSE; The ontologyReference list should contain links to various ontology documentation (URL and type) supplied as a dataframe, an unique ontology database identifier, an ontology name and an ontology version (no specific format). In the Examples section an example on how to specify this list is provided; default: list()
reference	character; required: FALSE; Bibliographical reference describing the method.; default: "".

Details

Update the details of an existing method

Value

data.frame

Author(s)

brapir generator package

References

BrAPI SwaggerHub

See Also

Other brapi_1.3: brapi_get_allelematrices_search(), brapi_get_allelematrices(), brapi_get_attributes_categories(), brapi_get_attributes(), brapi_get_breedingmethods_breedingMethodDbId(), brapi_get_breedingmethods(), brapi_get_calls(), brapi_get_commoncropnames(), brapi_get_germplasm_germplasmDbId_attributes(), brapi_get_germplasm_germplasmDbId_markerprofiles(), brapi_get_germplasm_germplasmDbId_mcpd(), brapi_get_germplasm_germplasmDbId_pedigree(), brapi_get_germplasm_germplasmDbId_progeny(), brapi_get_germplasm_germplasmDbId(), brapi_get_germplasm(), brapi_get_images_imageDbId(), brapi_get_images(), brapi_get_lists_listDbId(), brapi_get_lists(), brapi_get_locations_locationDbId(), brapi_get_locations(), brapi_get_maps_mapDbId_positions_linkageGroupName(), brapi_get_maps_mapDbId_positions(), brapi_get_maps_mapDbId(), brapi_get_maps(), brapi_get_markerprofiles_markerProfileDbId(), brapi_get_markerprofiles(), brapi_get_markers_markerDbId(), brapi_get_markers(), brapi_get_methods_methodDbId(), brapi_get_methods(), brapi_get_observationlevels(), brapi_get_observationunits(), brapi_get_ontologies(), brapi_get_people_personDbId(), brapi_get_people(), brapi_get_programs(), brapi_get_samples_sampleDbId(), brapi_get_samples(), brapi_get_scales_scaleDbId(), brapi_get_scales(), brapi_get_search_germplasm_searchResultsDbId(), brapi_get_search_images_searchResultsDbId(), brapi_get_search_markers_searchResultsDbId(), brapi_get_search_observationtables_searchResultsDbId(), brapi_get_search_observationunits_searchResultsDbId(), brapi_get_search_programs_searchResultsDbId(), brapi_get_search_samples_searchResultsDbId(), brapi_get_search_studies_searchResultsDbId(), brapi_get_search_variables_searchResultsDbId(), brapi_get_seasons(), brapi_get_studies_studyDbId_germplasm(), brapi_get_studies_studyDbId_layouts(), brapi_get_studies_studyDbId_observations(), brapi_get_studies_studyDbId_observationunits(), brapi_get_studies_studyDbId_observationvariables(), brapi_get_studies_studyDbId_table(), brapi_get_studies_studyDbId(), brapi_get_studies(), brapi_get_studytypes(), brapi_get_traits_traitDbId(), brapi_get_traits(), brapi_get_trials_trialDbId(), brapi_get_trials(), brapi_get_variables_observationVariableDbId(), brapi_get_variables(), brapi_get_vendor_orders_orderId_plates(), brapi_get_vendor_orders_orderId_results(), brapi_get_vendor_orders_orderId_status(), brapi_get_vendor_orders(), brapi_get_vendor_plates_submissionId(), brapi_get_vendor_specifications(), brapi_post_allelematrices_search(), brapi_post_images(), brapi_post_lists_listDbId_items(), brapi_post_lists(), brapi_post_methods(), brapi_post_people(), brapi_post_phenotypes(), brapi_post_scales(), brapi_post_search_germplasm(), brapi_post_search_images(), brapi_post_search_markers(), brapi_post_search_observationtables(), brapi_post_search_observationunits(), brapi_post_search_programs(), brapi_post_search_samples(), brapi_post_search_studies(), brapi_post_search_variables(), brapi_post_studies_studyDbId_table(), brapi_post_traits(), brapi_post_vendor_orders(), brapi_post_vendor_plates(), brapi_put_images_imageDbId_imagecontent(), brapi_put_images_imageDbId(), brapi_put_lists_listDbId(), brapi_put_people_personDbId(), brapi_put_samples(), brapi_put_scales_scaleDbId(), brapi_put_studies_studyDbId_layouts(), brapi_put_studies_studyDbId_observations(), brapi_put_studies_studyDbId_observationunits(), brapi_put_traits_traitDbId()

Other Observation Variables: brapi_get_methods_methodDbId(), brapi_get_methods(), brapi_get_ontologies(), brapi_get_scales_scaleDbId(), brapi_get_scales(), brapi_get_search_variables_searchResultsDbId(), brapi_get_studies_studyDbId_observationvariables(), brapi_get_traits_traitDbId(), brapi_get_traits(), brapi_get_variables_observationVariableDbId(), brapi_get_variables(), brapi_post_methods(), brapi_post_scales(), brapi_post_search_variables(), brapi_post_traits(), brapi_put_scales_scaleDbId(), brapi_put_traits_traitDbId()

Examples

## Not run: 

# Create a connection object
con <- brapi_db()$testserver

# Create an ontologyReference example list object
# ontologyDbId should be specified as an existing one (see get /ontologies) or
# left empty (some servers might generate a new ontologyDbId).
ontologyReference <- list(
  documentationLinks = data.frame(URL = "https://ontology.org/m1",
                                  type = "WEBPAGE"),
  ontologyDbId = "MO_123",
  ontologyName = "Ontology.org",
  version = "17")

# Make put /methods/{methodDbId} call
brapi_put_methods_methodDbId(con = con,
                             methodDbId = "m1",
                             class = "Numeric",
                             description = "Standard measuring tape",
                             formula = "sqrt(a^2 + b^2) = c",
                             methodName = "Tape Measurement",
                             ontologyReference = ontologyReference,
                             reference = "goggles.com")

## End(Not run)

mverouden/brapir documentation built on April 10, 2022, 5:36 p.m.