brapir: Client to Access BrAPI Compliant Plant Breeding Databases

brapi_put_samples

R Documentation

put /samples

Description

Add a new Sample

Usage

brapi_put_samples(
  con = NULL,
  germplasmDbId = "",
  notes = "",
  observationUnitDbId = "",
  plantDbId = "",
  plateDbId = "",
  plateIndex = 0,
  plotDbId = "",
  sampleDbId = "",
  sampleTimestamp = "",
  sampleType = "",
  studyDbId = "",
  takenBy = "",
  tissueType = ""
)

Arguments

`con`	list; required: TRUE; BrAPI connection object
`germplasmDbId`	character; required: FALSE; The internal database identifier which uniquely identifies a germplasm; default: "".
`notes`	character; required: FALSE; Additional notes about a sample; default: "".
`observationUnitDbId`	character; required: FALSE; The internal database identifier, which uniquely identifies an observation unit; default: "".
`plantDbId`	character; required: FALSE; The internal database identifier, which uniquely identifies a plant. Usually 'plantNumber'; default: "".
`plateDbId`	character; required: FALSE; The internal database identifier, which uniquely identifies a plate of samples; default: "".
`plateIndex`	integer; required: FALSE; The index number of this sample on a plate; default: 0
`plotDbId`	character; required: FALSE; The internal database indentifier, which uniquely identifies a plot. Usually 'plotNumber'; default: "".
`sampleDbId`	character; required: FALSE; The internal database identifier, which uniquely identifies a sample; default: "".
`sampleTimestamp`	character; required: FALSE; The date and time when the sample was collected from the field and specified in the ISO 8601 format; default: "".
`sampleType`	character; required: FALSE; The type of sample taken. e.g. 'DNA', 'RNA', 'Tissue', etc. ; default: "".
`studyDbId`	character; required: FALSE; The internal database identifier, which uniquely identifies a study within the given database server; default: "".
`takenBy`	character; required: FALSE; The name or identifier of the entity which took the sample from the field; default: "".
`tissueType`	character; required: FALSE; The type of tissue sampled, e.g. 'Leaf', 'Root', etc.; default: "".

Details

Call to register the event of a sample being taken, where sampleDbId is assigned as a result of the operation and returned in response.

Value

data.frame

Author(s)

brapir generator package

References

BrAPI SwaggerHub

Other brapi_1.3: brapi_get_allelematrices_search(), brapi_get_allelematrices(), brapi_get_attributes_categories(), brapi_get_attributes(), brapi_get_breedingmethods_breedingMethodDbId(), brapi_get_breedingmethods(), brapi_get_calls(), brapi_get_commoncropnames(), brapi_get_germplasm_germplasmDbId_attributes(), brapi_get_germplasm_germplasmDbId_markerprofiles(), brapi_get_germplasm_germplasmDbId_mcpd(), brapi_get_germplasm_germplasmDbId_pedigree(), brapi_get_germplasm_germplasmDbId_progeny(), brapi_get_germplasm_germplasmDbId(), brapi_get_germplasm(), brapi_get_images_imageDbId(), brapi_get_images(), brapi_get_lists_listDbId(), brapi_get_lists(), brapi_get_locations_locationDbId(), brapi_get_locations(), brapi_get_maps_mapDbId_positions_linkageGroupName(), brapi_get_maps_mapDbId_positions(), brapi_get_maps_mapDbId(), brapi_get_maps(), brapi_get_markerprofiles_markerProfileDbId(), brapi_get_markerprofiles(), brapi_get_markers_markerDbId(), brapi_get_markers(), brapi_get_methods_methodDbId(), brapi_get_methods(), brapi_get_observationlevels(), brapi_get_observationunits(), brapi_get_ontologies(), brapi_get_people_personDbId(), brapi_get_people(), brapi_get_programs(), brapi_get_samples_sampleDbId(), brapi_get_samples(), brapi_get_scales_scaleDbId(), brapi_get_scales(), brapi_get_search_germplasm_searchResultsDbId(), brapi_get_search_images_searchResultsDbId(), brapi_get_search_markers_searchResultsDbId(), brapi_get_search_observationtables_searchResultsDbId(), brapi_get_search_observationunits_searchResultsDbId(), brapi_get_search_programs_searchResultsDbId(), brapi_get_search_samples_searchResultsDbId(), brapi_get_search_studies_searchResultsDbId(), brapi_get_search_variables_searchResultsDbId(), brapi_get_seasons(), brapi_get_studies_studyDbId_germplasm(), brapi_get_studies_studyDbId_layouts(), brapi_get_studies_studyDbId_observations(), brapi_get_studies_studyDbId_observationunits(), brapi_get_studies_studyDbId_observationvariables(), brapi_get_studies_studyDbId_table(), brapi_get_studies_studyDbId(), brapi_get_studies(), brapi_get_studytypes(), brapi_get_traits_traitDbId(), brapi_get_traits(), brapi_get_trials_trialDbId(), brapi_get_trials(), brapi_get_variables_observationVariableDbId(), brapi_get_variables(), brapi_get_vendor_orders_orderId_plates(), brapi_get_vendor_orders_orderId_results(), brapi_get_vendor_orders_orderId_status(), brapi_get_vendor_orders(), brapi_get_vendor_plates_submissionId(), brapi_get_vendor_specifications(), brapi_post_allelematrices_search(), brapi_post_images(), brapi_post_lists_listDbId_items(), brapi_post_lists(), brapi_post_methods(), brapi_post_people(), brapi_post_phenotypes(), brapi_post_scales(), brapi_post_search_germplasm(), brapi_post_search_images(), brapi_post_search_markers(), brapi_post_search_observationtables(), brapi_post_search_observationunits(), brapi_post_search_programs(), brapi_post_search_samples(), brapi_post_search_studies(), brapi_post_search_variables(), brapi_post_studies_studyDbId_table(), brapi_post_traits(), brapi_post_vendor_orders(), brapi_post_vendor_plates(), brapi_put_images_imageDbId_imagecontent(), brapi_put_images_imageDbId(), brapi_put_lists_listDbId(), brapi_put_methods_methodDbId(), brapi_put_people_personDbId(), brapi_put_scales_scaleDbId(), brapi_put_studies_studyDbId_layouts(), brapi_put_studies_studyDbId_observations(), brapi_put_studies_studyDbId_observationunits(), brapi_put_traits_traitDbId()