curated.genesets: Curated Gene Sets

In mw201608/GOtest: Gene Ontology and Set Enrichment Test

Curated Gene Sets

Description

This function returns curated gene set collections

Usage

curated.genesets(sets=c('MacArthur'), return.data.frame=TRUE)

Arguments

sets	A vector of possible set collections. See details.
return.data.frame	Logic, return a data.frame (when TRUE) or a list (when FALSE).

Details

The collection of genes includes:

HGNC_universe: approved symbols for 18,991 protein-coding genes according to HGNC as of Feb 9, 2015, (https://github.com/macarthur-lab/gene_lists);

MacArthur: a list of 23 functional gene sets curated by the MacArthur's Lab (https://github.com/macarthur-lab/gene_lists).

Value

Either a data.frame or a list with three components as retunred by read.gmt

Examples

##not run###
#x=curated.genesets(c('MacArthur'))

mw201608/GOtest documentation built on May 3, 2023, 11:49 a.m.