shorten.MSigDB.terms: Shorten MSigDB gene set terms

In mw201608/GOtest: Gene Ontology and Set Enrichment Test

Shorten MSigDB gene set terms

Description

Simplify/shorten MSigDB gene set terms to make them more space economic when plotting.

Usage

shorten.MSigDB.terms(x, maxlen=32, Tolower=TRUE, unchange=FALSE, parms=list())

Arguments

x	a vector of text strings of MSigDB gene set terms.
maxlen	maximum lenth allowed.
Tolower	logic, whether to convert upper case letters to lower case.
unchange	logic, whether to return x unchanged.
parms	a named list specifying the paramter values of maxlen, Tolower, and unchange. Useful when calling inside a function.

Details

See function source code for details.

See Also

plotGseaEnrTable

Examples

shorten.MSigDB.terms('GO_NEGATIVE_REGULATION_OF_ACUTE_INFLAMMATORY_RESPONSE', 
	parms = list(maxlen=40, Tolower=TRUE))

mw201608/GOtest documentation built on May 3, 2023, 11:49 a.m.