Man pages for mwpennell/arbutus
Evaluate the adequacy of continuous trait models
| arbutus | Arbutus: Evaluate model adequacy for phylogenetic models of... |
| arbutus_plot_dist | Plot the simulated test statistics versus observed test... |
| arbutus_plot_point | Plot the simulated test statistics versus observed test... |
| calculate_pic_stat | Calculate test statistics on a unit tree |
| check_pic_stat | Internal function to check test statistics |
| compare_pic_stat | Compare observed and simulated test statistics |
| default_pic_stat | Internal function for getting default test statistics |
| finch | Galapagos finch dataset |
| is.unit.tree | Check if object is a unit.tree |
| mahalanobis_arbutus | Multivariate measure of model adequacy |
| make_model_phylo | Rescale phylogeny based on fitted model parameters |
| make_unit_tree | Create unit.tree object |
| model_info | Get model and data from model fitted object |
| pic_stat_cvar | Coefficient of variation of contrasts |
| pic_stat_cvar_plot | Plot histogram of contrasts with variance |
| pic_stat_dcdf | Evaluate normality of contrasts |
| pic_stat_dcdf_plot | Plot empirical cumulative distribution of contrasts versus a... |
| pic_stat_msig | REML estimate of BM parameter |
| pic_stat_msig_plot | Plot histogram of squared contrasts |
| pic_stat_sasr | Relationship between contrasts and inferred ancestral state |
| pic_stat_sasr_plot | Plot contrasts versus their inferred ancestral states |
| pic_stat_shgt | Relationship between contrasts and node height |
| pic_stat_shgt_plot | Plot contrasts versus their node height |
| pic_stat_svar | Relationship between contrasts and their variances |
| pic_stat_svar_plot | Plot contrasts versus their variances |
| plot.arbutus | Plot the simulated test statistics versus observed test... |
| print.arbutus | Print arbutus object |
| pvalue_arbutus | Extract p-values for test statistics |
| simulate_char_unit | Simulate character evolution on unit tree |
