API for mwpennell/arbutus
Evaluate the adequacy of continuous trait models
| Global functions | |
|---|---|
| arbutus | Man page Source code |
| arbutus-arbutus | Man page |
| arbutus_plot_dist | Man page Source code |
| arbutus_plot_point | Man page Source code |
| assert.is.unit.tree | Source code |
| branching.times.by.depth | Source code |
| calculate_pic_stat | Man page Source code |
| check.names.phylo | Source code |
| check.tree.data | Source code |
| check_pic_stat | Man page Source code |
| compare_pic_stat | Man page Source code |
| default_colours_arbutus | Source code |
| default_pic_stat | Man page Source code |
| diversitree.to.arbutus.recast | Source code |
| diversitree.to.arbutus.se | Source code |
| edge.height | Source code |
| estimate.sigma2.gls | Source code |
| estimate.sigma2.pgls | Source code |
| finch | Man page |
| get.cache | Source code |
| get.children | Source code |
| get.likelihood | Source code |
| get.ordering | Source code |
| get.pgls.pars.unity | Source code |
| hist_fill | Source code |
| hist_outline | Source code |
| hist_xy | Source code |
| is.constrained | Source code |
| is.unit.tree | Man page Source code |
| mahalanobis_arbutus | Man page Source code |
| make_model_phylo | Man page Source code |
| make_model_phylo.fitC | Source code |
| make_model_phylo.fitOU | Source code |
| make_unit_tree | Man page Source code |
| make_unit_tree.default | Source code |
| make_unit_tree.mcmcsamples | Source code |
| make_unit_tree.mcmcsamples.pgls | Source code |
| make_unit_tree.multiPhylo | Source code |
| make_unit_tree.phylo | Source code |
| ml.to.reml | Source code |
| model_data | Source code |
| model_data.OUwie | Source code |
| model_data.fit.mle | Source code |
| model_data.fit.mle.pgls | Source code |
| model_data.gfit | Source code |
| model_data.gls | Source code |
| model_data.mcmcsamples | Source code |
| model_data.mcmcsamples.pgls | Source code |
| model_data.pgls | Source code |
| model_data.phylolm | Source code |
| model_info | Man page Source code |
| model_info.OUwie | Source code |
| model_info.fit.mle | Source code |
| model_info.gfit | Source code |
| model_info.gls | Source code |
| model_info.mcmcsamples | Source code |
| model_info.pgls | Source code |
| model_info.phylolm | Source code |
| model_pars | Source code |
| model_pars.OUwie | Source code |
| model_pars.corStruct | Source code |
| model_pars.fit.mle | Source code |
| model_pars.fit.mle.pgls | Source code |
| model_pars.gfit | Source code |
| model_pars.gls | Source code |
| model_pars.mcmcsamples | Source code |
| model_pars.mcmcsamples.pgls | Source code |
| model_pars.pgls | Source code |
| model_pars.phylolm | Source code |
| model_phylo_bm | Source code |
| model_phylo_bms | Source code |
| model_phylo_delta | Source code |
| model_phylo_eb | Source code |
| model_phylo_kappa | Source code |
| model_phylo_lambda | Source code |
| model_phylo_ou | Source code |
| model_phylo_ouse | Source code |
| model_phylo_rescale | Source code |
| model_phylo_se | Source code |
| model_phylo_trend | Source code |
| model_phylo_white | Source code |
| model_type | Source code |
| model_type.OUwie | Source code |
| model_type.fit.mle | Source code |
| model_type.fit.mle.pgls | Source code |
| model_type.gfit | Source code |
| model_type.gls | Source code |
| model_type.mcmcsamples | Source code |
| model_type.mcmcsamples.pgls | Source code |
| model_type.pgls | Source code |
| model_type.phylolm | Source code |
| parnames.bm | Source code |
| parnames.bms | Source code |
| parnames.delta | Source code |
| parnames.eb | Source code |
| parnames.kappa | Source code |
| parnames.lambda | Source code |
| parnames.ou | Source code |
| parnames.white | Source code |
| parnmaes.trend | Source code |
| pic_stat_cvar | Man page Source code |
| pic_stat_cvar_plot | Man page Source code |
| pic_stat_dcdf | Man page Source code |
| pic_stat_dcdf_plot | Man page Source code |
| pic_stat_msig | Man page Source code |
| pic_stat_msig_plot | Man page Source code |
| pic_stat_sasr | Man page Source code |
| pic_stat_sasr_plot | Man page Source code |
| pic_stat_shgt | Man page Source code |
| pic_stat_shgt_plot | Man page Source code |
| pic_stat_svar | Man page Source code |
| pic_stat_svar_plot | Man page Source code |
| plot.arbutus | Man page Source code |
| print.arbutus | Man page Source code |
| prune.phylo | Source code |
| pvalue_arbutus | Man page Source code |
| reml.to.ml | Source code |
| sim.char.std.bm | Source code |
| simulate_char_unit | Man page Source code |
| translate.ape.arbutus | Source code |
| tree.depth | Source code |
