API for mwpennell/arbutus
Evaluate the adequacy of continuous trait models

Global functions
arbutus Man page Source code
arbutus-arbutus Man page
arbutus-package Man page
arbutus_plot_dist Man page Source code
arbutus_plot_point Man page Source code
assert.is.unit.tree Source code
branching.times.by.depth Source code
calculate_pic_stat Man page Source code
check.names.phylo Source code
check.tree.data Source code
check_pic_stat Man page Source code
compare_pic_stat Man page Source code
default_colours_arbutus Source code
default_pic_stat Man page Source code
diversitree.to.arbutus.recast Source code
diversitree.to.arbutus.se Source code
edge.height Source code
estimate.sigma2.gls Source code
estimate.sigma2.pgls Source code
finch Man page
get.cache Source code
get.children Source code
get.likelihood Source code
get.ordering Source code
get.pgls.pars.unity Source code
hist_fill Source code
hist_outline Source code
hist_xy Source code
is.constrained Source code
is.unit.tree Man page Source code
mahalanobis_arbutus Man page Source code
make_model_phylo Man page Source code
make_model_phylo.fitC Source code
make_unit_tree Man page Source code
make_unit_tree.default Source code
make_unit_tree.mcmcsamples Source code
make_unit_tree.mcmcsamples.pgls Source code
make_unit_tree.multiPhylo Source code
make_unit_tree.phylo Source code
ml.to.reml Source code
model_data Source code
model_data.fit.mle Source code
model_data.fit.mle.pgls Source code
model_data.gfit Source code
model_data.gls Source code
model_data.mcmcsamples Source code
model_data.mcmcsamples.pgls Source code
model_data.pgls Source code
model_data.phylolm Source code
model_info Man page Source code
model_info.fit.mle Source code
model_info.gfit Source code
model_info.gls Source code
model_info.mcmcsamples Source code
model_info.pgls Source code
model_info.phylolm Source code
model_pars Source code
model_pars.corStruct Source code
model_pars.fit.mle Source code
model_pars.fit.mle.pgls Source code
model_pars.gfit Source code
model_pars.gls Source code
model_pars.mcmcsamples Source code
model_pars.mcmcsamples.pgls Source code
model_pars.pgls Source code
model_pars.phylolm Source code
model_phylo_bm Source code
model_phylo_delta Source code
model_phylo_eb Source code
model_phylo_kappa Source code
model_phylo_lambda Source code
model_phylo_ou Source code
model_phylo_rescale Source code
model_phylo_se Source code
model_phylo_trend Source code
model_phylo_white Source code
model_type Source code
model_type.fit.mle Source code
model_type.fit.mle.pgls Source code
model_type.gfit Source code
model_type.gls Source code
model_type.mcmcsamples Source code
model_type.mcmcsamples.pgls Source code
model_type.pgls Source code
model_type.phylolm Source code
parnames.bm Source code
parnames.delta Source code
parnames.eb Source code
parnames.kappa Source code
parnames.lambda Source code
parnames.ou Source code
parnames.white Source code
parnmaes.trend Source code
pic_stat_cvar Man page Source code
pic_stat_cvar_plot Man page Source code
pic_stat_dcdf Man page Source code
pic_stat_dcdf_plot Man page Source code
pic_stat_msig Man page Source code
pic_stat_msig_plot Man page Source code
pic_stat_sasr Man page Source code
pic_stat_sasr_plot Man page Source code
pic_stat_shgt Man page Source code
pic_stat_shgt_plot Man page Source code
pic_stat_svar Man page Source code
pic_stat_svar_plot Man page Source code
plot.arbutus Man page Source code
print.arbutus Man page Source code
prune.phylo Source code
pvalue_arbutus Man page Source code
reml.to.ml Source code
sim.char.std.bm Source code
simulate_char_unit Man page Source code
translate.ape.arbutus Source code
tree.depth Source code
mwpennell/arbutus documentation built on May 23, 2017, 9:28 a.m.