Evaluate the adequacy of continuous trait models

arbutus | Arbutus: Evaluate model adequacy for phylogenetic models of... |

arbutus_plot_dist | Plot the simulated test statistics versus observed test... |

arbutus_plot_point | Plot the simulated test statistics versus observed test... |

calculate_pic_stat | Calculate test statistics on a unit tree |

check_pic_stat | Internal function to check test statistics |

compare_pic_stat | Compare observed and simulated test statistics |

default_pic_stat | Internal function for getting default test statistics |

finch | Galapagos finch dataset |

is.unit.tree | Check if object is a unit.tree |

mahalanobis_arbutus | Multivariate measure of model adequacy |

make_model_phylo | Rescale phylogeny based on fitted model parameters |

make_unit_tree | Create unit.tree object |

model_info | Get model and data from model fitted object |

pic_stat_cvar | Coefficient of variation of contrasts |

pic_stat_cvar_plot | Plot histogram of contrasts with variance |

pic_stat_dcdf | Evaluate normality of contrasts |

pic_stat_dcdf_plot | Plot empirical cumulative distribution of contrasts versus a... |

pic_stat_msig | REML estimate of BM parameter |

pic_stat_msig_plot | Plot histogram of squared contrasts |

pic_stat_sasr | Relationship between contrasts and inferred ancestral state |

pic_stat_sasr_plot | Plot contrasts versus their inferred ancestral states |

pic_stat_shgt | Relationship between contrasts and node height |

pic_stat_shgt_plot | Plot contrasts versus their node height |

pic_stat_svar | Relationship between contrasts and their variances |

pic_stat_svar_plot | Plot contrasts versus their variances |

plot.arbutus | Plot the simulated test statistics versus observed test... |

print.arbutus | Print arbutus object |

pvalue_arbutus | Extract p-values for test statistics |

simulate_char_unit | Simulate character evolution on unit tree |

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