tests/Test_Install.md

In n-mounier/bGWAS: Bayesian Genome-Wide Association Study

Test installation of the package on different OS / R versions:

Test on my laptop

macOS, version 10.13.6 - R version 3.4.3 (with TwoSampleMR already installed) ok

Test using travis CI

Note, August 2019: "release"=3.6.1 - "oldrel"=3.5.3

Test on rstudio cloud

Ubuntu, version 6.04.6 LTS (Xenial Xerus) - R version 3.6.0 ok - R version 3.5.3 ok - R version 3.4.4 Failed to install 'TwoSampleMR' from GitHub: (converted from warning) package ‘metafor’ is not available (for R version 3.4.4) - R version 3.3.3 Failed to install 'TwoSampleMR' from GitHub: (converted from warning) package ‘metafor’ is not available (for R version 3.3.3) - R version 3.2.5 Failed to install 'TwoSampleMR' from GitHub: (converted from warning) package ‘metafor’ is not available (for R version 3.3.3)

Test on HPC1

CentOS Linux, version 7 - R version 3.4.3 (with TwoSampleMR already installed) ok

Dependencies and versions

• DEPENDS dplyr (>= 3.3.0) -> R 3.2.0 magrittr (>= 1.5) -> no version

• SUGGESTS testthat (...) -> R 3.1 knitr (...) -> R 3.2.3 remotes (...) -> R 3.0 rmarkdown (...) -> R 3.0

• IMPORTS calibrate (>= 1.7.2) -> R 1.8.0 data.table (>= 1.12.0) -> R 3.1.0 ggplot2 (>= 2.2.1) -> R 3.2.1 gplots (>= 3.0.1) -> R 3.0 qqman (>= 0.1.4) -> R 3.0.0 readr (>= 1.3.1) -> R 3.1 Rcpp (>= 0.12.15) -> R 3.0.0 rlang (>= 0.4.0) -> R 3.2 R.utils (>= 2.9.0) -> R 2.14.0 stringr (>= 1.4.0) -> R 3.1 tibble (>= 2.1.1) -> R 3.1.0 tidyr (>= 0.8.3) -> R 3.1 TwoSampleMR (>= 0.3.0) -> R 3.1

According to this, the lowest version needed would be R 3.2.3 ... but actually, TwoSampleMR requires meta that requires metafor (R 3.5.0)...

n-mounier/bGWAS documentation built on Oct. 11, 2023, 1:39 a.m.