extractProtAAC: Amino Acid Composition Descriptor
In nanxstats/Rcpi: Molecular Informatics Toolkit for Compound-Protein Interaction in Drug Discovery
extractProtAAC R Documentation
Amino Acid Composition Descriptor
Description
Amino Acid Composition Descriptor
Usage
extractProtAAC(x)
Arguments
x
A character vector, as the input protein sequence.
Details
This function calculates the Amino Acid Composition descriptor (Dim: 20).
Value
A length 20 named vector
References
M. Bhasin, G. P. S. Raghava.
Classification of Nuclear Receptors Based on
Amino Acid Composition and Dipeptide Composition.
Journal of Biological Chemistry, 2004, 279, 23262.
See Also
See extractProtDC and extractProtTC
for Dipeptide Composition and Tripeptide Composition descriptors.
Examples
x = readFASTA(system.file('protseq/P00750.fasta', package = 'Rcpi'))[[1]]
extractProtAAC(x)
nanxstats/Rcpi documentation built on Sept. 24, 2024, 9:36 a.m.
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| extractProtAAC | R Documentation |
Amino Acid Composition Descriptor
Description
Amino Acid Composition Descriptor
Usage
extractProtAAC(x)
Arguments
x |
A character vector, as the input protein sequence. |
Details
This function calculates the Amino Acid Composition descriptor (Dim: 20).
Value
A length 20 named vector
References
M. Bhasin, G. P. S. Raghava. Classification of Nuclear Receptors Based on Amino Acid Composition and Dipeptide Composition. Journal of Biological Chemistry, 2004, 279, 23262.
See Also
See extractProtDC and extractProtTC
for Dipeptide Composition and Tripeptide Composition descriptors.
Examples
x = readFASTA(system.file('protseq/P00750.fasta', package = 'Rcpi'))[[1]]
extractProtAAC(x)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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