extractProtDC: Dipeptide Composition Descriptor
In nanxstats/Rcpi: Molecular Informatics Toolkit for Compound-Protein Interaction in Drug Discovery
extractProtDC R Documentation
Dipeptide Composition Descriptor
Description
Dipeptide Composition Descriptor
Usage
extractProtDC(x)
Arguments
x
A character vector, as the input protein sequence.
Details
This function calculates the Dipeptide Composition descriptor (Dim: 400).
Value
A length 400 named vector
References
M. Bhasin, G. P. S. Raghava.
Classification of Nuclear Receptors Based on
Amino Acid Composition and Dipeptide Composition.
Journal of Biological Chemistry, 2004, 279, 23262.
See Also
See extractProtAAC and extractProtTC
for Amino Acid Composition and Tripeptide Composition descriptors.
Examples
x = readFASTA(system.file('protseq/P00750.fasta', package = 'Rcpi'))[[1]]
extractProtDC(x)
nanxstats/Rcpi documentation built on Sept. 24, 2024, 9:36 a.m.
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| extractProtDC | R Documentation |
Dipeptide Composition Descriptor
Description
Dipeptide Composition Descriptor
Usage
extractProtDC(x)
Arguments
x |
A character vector, as the input protein sequence. |
Details
This function calculates the Dipeptide Composition descriptor (Dim: 400).
Value
A length 400 named vector
References
M. Bhasin, G. P. S. Raghava. Classification of Nuclear Receptors Based on Amino Acid Composition and Dipeptide Composition. Journal of Biological Chemistry, 2004, 279, 23262.
See Also
See extractProtAAC and extractProtTC
for Amino Acid Composition and Tripeptide Composition descriptors.
Examples
x = readFASTA(system.file('protseq/P00750.fasta', package = 'Rcpi'))[[1]]
extractProtDC(x)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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