getFASTAFromKEGG: Retrieve Protein Sequence in FASTA Format from the KEGG...
In nanxstats/Rcpi: Molecular Informatics Toolkit for Compound-Protein Interaction in Drug Discovery
getFASTAFromKEGG R Documentation
Retrieve Protein Sequence in FASTA Format from the KEGG Database
Description
Retrieve Protein Sequence in FASTA Format from the KEGG Database
Usage
getFASTAFromKEGG(id, parallel = 5)
Arguments
id
A character vector, as the protein ID.
parallel
An integer, the parallel parameter, indicates how many
process the user would like to use for retrieving
the data (using RCurl), default is 5.
For regular cases, we recommend a number less than 20.
Details
This function retrieves protein sequences in FASTA format
from the KEGG database.
Value
A list, each component contains one of the protein sequences
in FASTA format.
See Also
See getSeqFromKEGG for retrieving protein
represented by amino acid sequence from the KEGG database.
See readFASTA for reading FASTA format files.
Examples
id = c('hsa:10161', 'hsa:10162')
getFASTAFromKEGG(id)
nanxstats/Rcpi documentation built on July 6, 2023, 9:57 a.m.
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| getFASTAFromKEGG | R Documentation |
Retrieve Protein Sequence in FASTA Format from the KEGG Database
Description
Retrieve Protein Sequence in FASTA Format from the KEGG Database
Usage
getFASTAFromKEGG(id, parallel = 5)
Arguments
id |
A character vector, as the protein ID. |
parallel |
An integer, the parallel parameter, indicates how many
process the user would like to use for retrieving
the data (using RCurl), default is |
Details
This function retrieves protein sequences in FASTA format from the KEGG database.
Value
A list, each component contains one of the protein sequences in FASTA format.
See Also
See getSeqFromKEGG for retrieving protein
represented by amino acid sequence from the KEGG database.
See readFASTA for reading FASTA format files.
Examples
id = c('hsa:10161', 'hsa:10162')
getFASTAFromKEGG(id)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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