extractDC: Dipeptide Composition Descriptor
In nanxstats/protr: Generating Various Numerical Representation Schemes for Protein Sequences
extractDC R Documentation
Dipeptide Composition Descriptor
Description
This function calculates the Dipeptide Composition descriptor (dim: 400).
Usage
extractDC(x)
Arguments
x
A character vector, as the input protein sequence.
Value
A length 400 named vector
Author(s)
Nan Xiao <https://nanx.me>
References
M. Bhasin, G. P. S. Raghava.
Classification of Nuclear Receptors Based on
Amino Acid Composition and Dipeptide Composition.
Journal of Biological Chemistry, 2004, 279, 23262.
See Also
See extractAAC and extractTC
for Amino Acid Composition and Tripeptide Composition descriptors.
Examples
x <- readFASTA(system.file("protseq/P00750.fasta", package = "protr"))[[1]]
extractDC(x)
nanxstats/protr documentation built on April 24, 2024, 7:32 a.m.
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| extractDC | R Documentation |
Dipeptide Composition Descriptor
Description
This function calculates the Dipeptide Composition descriptor (dim: 400).
Usage
extractDC(x)
Arguments
x |
A character vector, as the input protein sequence. |
Value
A length 400 named vector
Author(s)
Nan Xiao <https://nanx.me>
References
M. Bhasin, G. P. S. Raghava. Classification of Nuclear Receptors Based on Amino Acid Composition and Dipeptide Composition. Journal of Biological Chemistry, 2004, 279, 23262.
See Also
See extractAAC and extractTC
for Amino Acid Composition and Tripeptide Composition descriptors.
Examples
x <- readFASTA(system.file("protseq/P00750.fasta", package = "protr"))[[1]]
extractDC(x)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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