unity.specgraph: Plot the results of mz-unity.search as a spectrum graph.

In nathaniel-mahieu/mz.unity: Detection of Complex Relationships In Mass Spectra

Description

unity.specgraph plots a graph of detected relationships on top of a mass spectrum.

Usage

unity.specgraph(df, spec, edgetypes, speccolor = "black",
  circlecolor = "forestgreen")

Arguments

df	data.frame Columns named "to", "from", "rel". "rel" is used for coloring.
spec	data.frame Columns named "mz", "int". Rows correspond to vertex indices "to" and "from" in df.
edgetypes	data.frame Defines the colors of each edge rel type. COlumn names "rel", "label", "color"
speccolor	character The color for the spectrum plot
circlecolor	character The color for the circles at the spectrum apexes.

Value

A ggplot object contianing the plot.

See Also

See https://github.com/nathaniel-mahieu/mz-unity for examples.

nathaniel-mahieu/mz.unity documentation built on May 23, 2019, 12:19 p.m.