unity.graph: Plot the results of mz-unity.search as a graph.

In nathaniel-mahieu/mz.unity: Detection of Complex Relationships In Mass Spectra

Description

unity.graph plots a graph of detected relationships.

Usage

unity.graph(df, spec, edgetypes, vcolors = c("forestgreen", "brown4"))

Arguments

df	data.frame Columns named "to", "from", "rel". "rel" is used for coloring.
spec	data.frame Columns named "mz", "int". Rows correspond to vertex indices "to" and "from" in df.
edgetypes	data.frame Defines the colors of each edge rel type. COlumn names "rel", "label", "color"
vcolors	character The color for the positive and negative nodes respectively.

Value

A ggplot object contianing the plot.

See Also

See https://github.com/nathaniel-mahieu/mz-unity for examples.

nathaniel-mahieu/mz.unity documentation built on May 23, 2019, 12:19 p.m.