plotVariableGenes: plotVariableGenes

In navinlabcode/copykit: CopyKit

plotVariableGenes

Description

Visualization for the most variable genes found with findVariableGenes.

Usage

plotVariableGenes(scCNA, n = 30)

Arguments

scCNA	scCNA object.
n	A numeric defining how many variable genes will be plotted.

Details

plotVariableGenes plots the list of genes that was found using findVariableGenes.

Value

A ggplot object with a plot of the variable genes detected.

See Also

findVariableGenes

Examples

copykit_obj <- copykit_example_filtered()
copykit_obj <- findVariableGenes(copykit_obj,
    genes = c("FHIT", "PTEN", "FOXO1", "BRCA1")
)
plotVariableGenes(copykit_obj)

navinlabcode/copykit documentation built on Sept. 22, 2023, 9:16 a.m.