runMetrics: Run metrics
In navinlabcode/copykit: CopyKit
runMetrics R Documentation
Run metrics
Description
Calculates the overdispersion and the breakpoint counts for each cell.
Usage
runMetrics(scCNA, BPPARAM = bpparam())
Arguments
scCNA
scCNA object.
BPPARAM
A BiocParallelParam specifying how the function
should be parallelized.
Details
Adds the metrics to the scCNA colData.
Those metrics can be used for subsetting the data if desired.
results can be visualized with plotMetrics.
Value
Adds columns 'overdispersion' and 'breakpoint_count' to
colData.
Author(s)
Darlan Conterno Minussi
Examples
copykit_obj <- mock_bincounts()
copykit_obj <- runMetrics(copykit_obj)
navinlabcode/copykit documentation built on Sept. 22, 2023, 9:16 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| runMetrics | R Documentation |
Run metrics
Description
Calculates the overdispersion and the breakpoint counts for each cell.
Usage
runMetrics(scCNA, BPPARAM = bpparam())
Arguments
scCNA |
scCNA object. |
BPPARAM |
A BiocParallelParam specifying how the function should be parallelized. |
Details
Adds the metrics to the scCNA colData.
Those metrics can be used for subsetting the data if desired.
results can be visualized with plotMetrics.
Value
Adds columns 'overdispersion' and 'breakpoint_count' to
colData.
Author(s)
Darlan Conterno Minussi
Examples
copykit_obj <- mock_bincounts()
copykit_obj <- runMetrics(copykit_obj)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.