ModelInput-class: ModelInput class

In ncats/MultiOmicsGraphPrediction: Network-Based Ensemble Prediction from IntLIM Predictors

ModelInput class

Description

ModelInput class

Slots

edge.wise.prediction

graph of co-regulation results from IntLIM

true.phenotypes

data frame of true phenotypes given analyte pairs and clinical covariates

coregulation.graph

the original co-regulation graph for the input data.

metaFeatures

A list of calculated meta-feature data frames for each sample

model.properties

A data frame that includes model information, i.e. R^2, interaction term p-value, and coefficients.

input.data

An IntLIMData object that includes slots for the sample data, the analyte data, and the analyte meta data.

covariates

A list of covariates to use in the models.

stype

Outcome/phenotype column name.

stype.class

Class of outcome/phenotype (either "numeric" or "character").

independent.var.type

Type of the independent variable (1 for analyte type 1 or 2 for analyte type 2)

outcome

Type of the outcome variable (1 for analyte type 1 or 2 for analyte type 2)

ncats/MultiOmicsGraphPrediction documentation built on Aug. 23, 2023, 9:19 a.m.