ncborcherding/Trex: Methods for TCR single-cell embedding

Implementation of the Trex algorithm for single-cell embedding based on TCR sequences. The package includes a standalone function to encode TCR sequence information by amino acid properties or sequence order using tensorflow-based autoencoder. In addition, the package interacts with SingleCellExperiment or Seurat data objects.

Getting started

Package details

Bioconductor views Annotation Classification ImmunoOncology Sequencing SingleCell Software
Maintainer
LicenseMIT + file LICENSE
Version0.99.11
URL https://github.com/ncborcherding/Trex/
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("ncborcherding/Trex")
ncborcherding/Trex documentation built on May 17, 2024, 2:31 a.m.