ncborcherding/Trex: Methods for TCR single-cell embedding
Implementation of the Trex algorithm for single-cell embedding based on TCR sequences. The package includes a standalone function to encode TCR sequence information by amino acid properties or sequence order using tensorflow-based autoencoder. In addition, the package interacts with SingleCellExperiment or Seurat data objects.
Getting started
Browse package contents
Package details |
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| Bioconductor views | Annotation Classification ImmunoOncology Sequencing SingleCell Software |
| Maintainer | |
| License | MIT + file LICENSE |
| Version | 0.99.11 |
| URL | https://github.com/ncborcherding/Trex/ |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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