quietTCRgenes: Remove TCR genes from variable gene results
In ncborcherding/Trex: Methods for TCR single-cell embedding
View source: R/quietTCRgenes.R
quietTCRgenes R Documentation
Remove TCR genes from variable gene results
Description
Most single-cell workflows use highly-expressed and highly-variable
genes for the initial calculation of PCA and subsequent dimensional
reduction. This function will remove the TCR genes from the variable
features in the Seurat object or from a vector generated by
the Bioconductor scran workflow.
Usage
quietTCRgenes(sc, assay = NULL)
Arguments
sc
Single-cell object in Seurat format or vector of variable genes to use in reduction
assay
The Seurat assay slot to use to remove TCR genes from, NULL value will default to
the default assay
Value
Seurat object or vector list with TCR genes removed.
Author(s)
Nicky de Vrij Nikolaj Pagh Nick Borcherding
Examples
trex_example <- quietTCRgenes(trex_example)
ncborcherding/Trex documentation built on Nov. 4, 2024, 10:31 p.m.
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View source: R/quietTCRgenes.R
| quietTCRgenes | R Documentation |
Remove TCR genes from variable gene results
Description
Most single-cell workflows use highly-expressed and highly-variable genes for the initial calculation of PCA and subsequent dimensional reduction. This function will remove the TCR genes from the variable features in the Seurat object or from a vector generated by the Bioconductor scran workflow.
Usage
quietTCRgenes(sc, assay = NULL)
Arguments
sc |
Single-cell object in Seurat format or vector of variable genes to use in reduction |
assay |
The Seurat assay slot to use to remove TCR genes from, NULL value will default to the default assay |
Value
Seurat object or vector list with TCR genes removed.
Author(s)
Nicky de Vrij Nikolaj Pagh Nick Borcherding
Examples
trex_example <- quietTCRgenes(trex_example)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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