Man pages for ncborcherding/Trex
Methods for TCR single-cell embedding
| annotateDB | Use reference database to annotate cdr3 sequences |
| CoNGAfy | Reduce a single-cell object to representative cells |
| maTrex | Main Trex interface |
| quietTCRgenes | Remove TCR genes from variable gene results |
| runTrex | Trex single cell calculation |
| Trex.Data | Amino acid properties and ranges for the autoencoder models... |
| Trex.database | Database for TCR-antigen relationships for both TRA and TRB... |
| trex_example | A seurat object of 3200 single T cells derived a CD3+ sorted... |
