ncborcherding/escape: Easy single cell analysis platform for enrichment

A bridging R package to facilitate gene set enrichment analysis (GSEA) in the context of single-cell RNA sequencing. Using raw count information, Seurat objects, or SingleCellExperiment format, users can perform and visualize ssGSEA, GSVA, AUCell, and UCell-based enrichment calculations across individual cells.

Getting started

Package details

Bioconductor views Annotation Classification GeneSetEnrichment GeneSignaling Pathways Sequencing SingleCell Software
LicenseMIT + file LICENSE
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
ncborcherding/escape documentation built on May 13, 2024, 9:37 p.m.