Files in ncborcherding/escape
Easy single cell analysis platform for enrichment
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pr-commands.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/densityEnrichment.R
R/escape.gene.sets.R
R/getGeneSets.R
R/geyserEnrichment.R
R/global.R
R/heatmapEnrichment.R
R/pcaEnrichment.R
R/performNormalization.R
R/performPCA.R
R/ridgeEnrichment.R
R/runEscape.R
R/scatterEnrichment.R
R/splitEnrichment.R
R/utils.R
README.md
data/escape.gene.sets.rda
escape.Rproj
inst/CITATION
inst/WORDLIST
man/densityEnrichment.Rd
man/escape.gene.sets.Rd
man/escape.matrix.Rd
man/getGeneSets.Rd
man/geyserEnrichment.Rd
man/heatmapEnrichment.Rd
man/pcaEnrichment.Rd
man/performNormalization.Rd
man/performPCA.Rd
man/ridgeEnrichment.Rd
man/runEscape.Rd
man/scatterEnrichment.Rd
man/splitEnrichment.Rd
tests/spelling.R
tests/testthat.R
tests/testthat/_snaps/densityEnrichment/denistyenrichment-default-plot.svg
tests/testthat/_snaps/densityEnrichment/denistyenrichment-group-by-plot.svg
tests/testthat/_snaps/geyserEnrichment/geyserenrichment-default-plot.svg
tests/testthat/_snaps/geyserEnrichment/geyserenrichment-facet-plot.svg
tests/testthat/_snaps/geyserEnrichment/geyserenrichment-gradient-facet-plot.svg
tests/testthat/_snaps/geyserEnrichment/geyserenrichment-gradient-plot.svg
tests/testthat/_snaps/geyserEnrichment/geyserenrichment-gradient-reorder-plot.svg
tests/testthat/_snaps/geyserEnrichment/geyserenrichment-order-plot.svg
tests/testthat/_snaps/geyserEnrichment/geyserenrichment-scale-plot.svg
tests/testthat/_snaps/heatmapEnrichment/heatmapenrichment-clustercolumns-plot.svg
tests/testthat/_snaps/heatmapEnrichment/heatmapenrichment-clusterrows-plot.svg
tests/testthat/_snaps/heatmapEnrichment/heatmapenrichment-default-plot.svg
tests/testthat/_snaps/heatmapEnrichment/heatmapenrichment-facet-plot.svg
tests/testthat/_snaps/heatmapEnrichment/heatmapenrichment-scale-plot.svg
tests/testthat/_snaps/pcaEnrichment/pcaenrichment-addfactors-plot.svg
tests/testthat/_snaps/pcaEnrichment/pcaenrichment-facetby-addfactors-plot.svg
tests/testthat/_snaps/pcaEnrichment/pcaenrichment-facetby-plot.svg
tests/testthat/_snaps/pcaEnrichment/pcaenrichment-hex-plot.svg
tests/testthat/_snaps/pcaEnrichment/pcaenrichment-plot.svg
tests/testthat/_snaps/ridgeEnrichment/ridgeenrichment-default-plot.svg
tests/testthat/_snaps/ridgeEnrichment/ridgeenrichment-facet-plot.svg
tests/testthat/_snaps/ridgeEnrichment/ridgeenrichment-gradient-facet-plot.svg
tests/testthat/_snaps/ridgeEnrichment/ridgeenrichment-gradient-plot.svg
tests/testthat/_snaps/ridgeEnrichment/ridgeenrichment-gradient-reorder-plot.svg
tests/testthat/_snaps/ridgeEnrichment/ridgeenrichment-order-plot.svg
tests/testthat/_snaps/ridgeEnrichment/ridgeenrichment-rugadded-plot.svg
tests/testthat/_snaps/scatterEnrichment/scatterenrichment-default-plot.svg
tests/testthat/_snaps/scatterEnrichment/scatterenrichment-facet-plot.svg
tests/testthat/_snaps/scatterEnrichment/scatterenrichment-hex-plot.svg
tests/testthat/_snaps/scatterEnrichment/scatterenrichment-scale-plot.svg
tests/testthat/_snaps/splitEnrichment/splitenrichment-default-plot.svg
tests/testthat/_snaps/splitEnrichment/splitenrichment-facet-plot.svg
tests/testthat/_snaps/splitEnrichment/splitenrichment-mean-plot.svg
tests/testthat/helper-testingFunctions.R
tests/testthat/helper-vdiffr.R
tests/testthat/test-densityEnrichment.R
tests/testthat/test-getGeneSets.R
tests/testthat/test-geyserEnrichment.R
tests/testthat/test-heatmapEnrichment.R
tests/testthat/test-pcaEnrichment.R
tests/testthat/test-performNormalization.R
tests/testthat/test-performPCA.R
tests/testthat/test-ridgeEnrichment.R
tests/testthat/test-runEscape.R
tests/testthat/test-scatterEnrichment.R
tests/testthat/test-splitEnrichment.R
tests/testthat/test-utils.R
tests/testthat/testdata/getGeneSets/getGeneSets_C5.rds
tests/testthat/testdata/getGeneSets/getGeneSets_default.rds
tests/testthat/testdata/getGeneSets/getGeneSets_mouse.rds
tests/testthat/testdata/performNormalization/GS.Hallmark.rds
tests/testthat/testdata/performNormalization/performNormalization_nonpositive.rds
tests/testthat/testdata/performNormalization/performNormalization_positve.rds
tests/testthat/testdata/performPCA/pbmc_hallmarks.rds
tests/testthat/testdata/performPCA/performPCA_PCAvalues.rds
tests/testthat/testdata/runEscape/.Rapp.history
tests/testthat/testdata/runEscape/escape.matrix_AUCell.rds
tests/testthat/testdata/runEscape/escape.matrix_GSVA.rds
tests/testthat/testdata/runEscape/escape.matrix_UCell.rds
tests/testthat/testdata/runEscape/escape.matrix_ssGSEA.rds
tests/testthat/testdata/runEscape/pbmc_small_ssGSEA.rds
tests/testthat/testdata/utils/makeDFfromSCO_data.frame.rds
tests/testthat/testdata/utils/orderFunction_group.rds
tests/testthat/testdata/utils/orderFunction_mean.rds
vignettes/vignette.Rmd
www/escape_hex.png
