ncborcherding/scRepertoire: A toolkit for single-cell immune receptor profiling

scRepertoire was built to process data derived from the 10x Genomics Chromium Immune Profiling for both T-cell receptor (TCR) and immunoglobulin (Ig) enrichment workflows and subsequently interacts with the popular Seurat and SingleCellExperiment R packages. It also allows for general analysis of single-cell clonotype information without the use of expression information. The package functions as a wrapper for Startrac and powerTCR R packages.

Getting started

Package details

Bioconductor views Annotation Classification ImmunoOncology Sequencing SingleCell Software
Maintainer
LicenseApache License 2.0
Version1.3.1
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("ncborcherding/scRepertoire")
ncborcherding/scRepertoire documentation built on June 21, 2021, 2:23 a.m.