ncborcherding/scRepertoire: A toolkit for single-cell immune receptor profiling

scRepertoire was built to process data derived from the 10x Genomics Chromium Immune Profiling for both T-cell receptor (TCR) and immunoglobulin (Ig) enrichment workflows and subsequently interacts with the popular Seurat and SingleCellExperiment R packages. It also allows for general analysis of single-cell clonotype information without the use of expression information. The package functions as a wrapper for Startrac and powerTCR R packages.

Getting started

Package details

Bioconductor views Annotation Classification ImmunoOncology Sequencing SingleCell Software
Maintainer
LicenseGPL-2
Version1.5.2
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("ncborcherding/scRepertoire")
ncborcherding/scRepertoire documentation built on April 26, 2022, 8:07 p.m.