ncborcherding/scRepertoire: A toolkit for single-cell immune receptor profiling

scRepertoire is a toolkit for processing and analyzing single-cell T-cell receptor (TCR) and immunoglobulin (Ig). The scRepertoire framework supports use of 10x, AIRR, BD, MiXCR, Omniscope, TRUST4, and WAT3R single-cell formats. The functionality includes basic clonal analyses, repertoire summaries, distance-based clustering and interaction with the popular Seurat and SingleCellExperiment/Bioconductor R workflows.

Getting started

Package details

Bioconductor views Annotation Classification ImmunoOncology Sequencing SingleCell Software
Maintainer
LicenseMIT + file LICENSE
Version2.0.4
URL https://www.borch.dev/uploads/screpertoire/
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("ncborcherding/scRepertoire")
ncborcherding/scRepertoire documentation built on May 22, 2024, 9:43 p.m.