scRepertoire-package: scRepertoire: A toolkit for single-cell immune receptor...

In ncborcherding/scRepertoire: A toolkit for single-cell immune receptor profiling

scRepertoire: A toolkit for single-cell immune receptor profiling

Description

scRepertoire is a toolkit for processing and analyzing single-cell T-cell receptor (TCR) and immunoglobulin (Ig). The scRepertoire framework supports use of 10x, AIRR, BD, MiXCR, Omniscope, TRUST4, and WAT3R single-cell formats. The functionality includes basic clonal analyses, repertoire summaries, distance-based clustering and interaction with the popular Seurat and SingleCellExperiment/Bioconductor R workflows.

Author(s)

Maintainer: Nick Borcherding [e-mail]

Authors:

• Qile Yang [e-mail]

• Ksenia Safina [e-mail]

See Also

Useful links:

• https://www.borch.dev/uploads/screpertoire/

• Report bugs at https://github.com/ncborcherding/scRepertoire/issues

ncborcherding/scRepertoire documentation built on April 7, 2024, 12:44 a.m.