scRepertoire-package: scRepertoire: A toolkit for single-cell immune receptor...
In ncborcherding/scRepertoire: A toolkit for single-cell immune receptor profiling
scRepertoire-package R Documentation
scRepertoire: A toolkit for single-cell immune receptor profiling
Description
scRepertoire is a toolkit for processing and analyzing single-cell T-cell receptor (TCR) and immunoglobulin (Ig). The scRepertoire framework supports use of 10x, AIRR, BD, MiXCR, Omniscope, TRUST4, and WAT3R single-cell formats. The functionality includes basic clonal analyses, repertoire summaries, distance-based clustering and interaction with the popular Seurat and SingleCellExperiment/Bioconductor R workflows.
Author(s)
Maintainer: Nick Borcherding ncborch@gmail.com
Authors:
Qile Yang qile.yang@berkeley.edu
Ksenia Safina safina@broadinstitute.org
Nicholas Bormann bormann.nicholas@mayo.edu
Gloria Kraus gloria.kraus@tu-dresden.de
Other contributors:
Justin Reimertz justin.reimertz@childrens.harvard.edu [contributor]
Michael Heming michaeloleg.heming@ukmuenster.de [contributor]
See Also
Useful links:
ncborcherding/scRepertoire documentation built on June 9, 2025, 1:42 p.m.
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| scRepertoire-package | R Documentation |
scRepertoire: A toolkit for single-cell immune receptor profiling
Description
scRepertoire is a toolkit for processing and analyzing single-cell T-cell receptor (TCR) and immunoglobulin (Ig). The scRepertoire framework supports use of 10x, AIRR, BD, MiXCR, Omniscope, TRUST4, and WAT3R single-cell formats. The functionality includes basic clonal analyses, repertoire summaries, distance-based clustering and interaction with the popular Seurat and SingleCellExperiment/Bioconductor R workflows.
Author(s)
Maintainer: Nick Borcherding ncborch@gmail.com
Authors:
Qile Yang qile.yang@berkeley.edu
Ksenia Safina safina@broadinstitute.org
Nicholas Bormann bormann.nicholas@mayo.edu
Gloria Kraus gloria.kraus@tu-dresden.de
Other contributors:
Justin Reimertz justin.reimertz@childrens.harvard.edu [contributor]
Michael Heming michaeloleg.heming@ukmuenster.de [contributor]
See Also
Useful links:
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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