PCAPlot2: Plot PCA map, with probabilities for computational cell...

Description Usage Arguments Details

View source: R/plotting_ident.R

Description

Graphs the output of a PCA analysis Cells are colored by their identity class. Based on Seurat::PCAPlot.

Usage

1
PCAPlot2(object, ident.threshold = 0.9, ...)

Arguments

object

Seurat object

ident.threshold

A probability threshold for cell identities, using object@meta.data["ident_prob"].

...

Additional parameters to DimPlot, for example, which dimensions to plot.

Details

This function is a wrapper for DimPlot. See ?DimPlot for a full list of possible arguments which can be passed in here.


ncchung/SeuratAddon documentation built on May 3, 2019, 3:17 p.m.