quantity_allocation_disagreement: Compares quantity and allocation disagreement of two raster...

In ncsu-landscape-dynamics/rpops: Pest or Pathogen Spread Model

Compares quantity and allocation disagreement of two raster data sets

Description

Uses quantity and allocation disagreement metrics by Pontius and Millones (2014) and omission and commission errors of comparing a modeled raster data set to a reference raster data set.

Usage

quantity_allocation_disagreement(
  reference,
  comparison,
  use_configuration = FALSE,
  mask = NULL,
  use_distance = FALSE
)

Arguments

reference	the raster with ground truth data. For all metrics expect RMSE these values are reclassified with values > 1 becoming 1, values < 1 going to 0, and NA values staying NA.
comparison	the raster with simulated data. For all metrics expect RMSE these values are reclassified with values > 1 becoming 1, values < 1 going to 0.
use_configuration	Boolean if you want to use configuration disagreement for comparing model runs. Default is FALSE.
mask	Used to provide a mask to remove 0's that are not true negatives from comparisons.
use_distance	Boolean if you want to compare distance between simulations and observations. Default is FALSE.

Value

A data frame with spatial configuration metrics. Particularly quantity, allocation, and total disagreement, omission and commission, and directional disagreement where directional disagreement.

ncsu-landscape-dynamics/rpops documentation built on March 30, 2024, 2:17 p.m.