Files in ncsu-landscape-dynamics/rpops
Pest or Pathogen Spread Model
.Rbuildignore
.Rprofile
.gitattributes
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/lint.yaml
.github/workflows/pkgdown.yml
.github/workflows/test-coverage.yaml
.gitignore
.gitmodules
.lintr
.travis.yml
CHANGELOG.md
CODE_OF_CONDUCT.md
CONTRIBUTING.md
DESCRIPTION
LICENSE
NAMESPACE
R/RcppExports.R
R/calibrate.R
R/checks.R
R/configuration.R
R/error_messages.R
R/helpers.R
R/lists.R
R/pops.r
R/pops_model.R
R/pops_multirun.R
R/quantity_allocation_disagreement.R
R/validate.R
README.md
_pkgdown.yml
inst/extdata/SODexample/all_plants.tif
inst/extdata/SODexample/host.tif
inst/extdata/SODexample/initial_infection2001.tif
inst/extdata/SODexample/initial_infections.tif
inst/extdata/SODexample/management.tif
inst/extdata/SODexample/weather.tif
inst/extdata/competency_table_2host.csv
inst/extdata/competency_table_multihost.csv
inst/extdata/competency_table_singlehost.csv
inst/extdata/pest_host_table.csv
inst/extdata/pest_host_table_2host.csv
inst/extdata/pest_host_table_singlehost.csv
inst/extdata/pest_host_table_singlehost010tl1.csv
inst/extdata/pest_host_table_singlehost025.csv
inst/extdata/pest_host_table_singlehost025tl3.csv
inst/extdata/pest_host_table_singlehost_nomort.csv
inst/extdata/simple20x20/all_plants.tif
inst/extdata/simple20x20/county_infected.gpkg
inst/extdata/simple20x20/county_infected_years.gpkg
inst/extdata/simple20x20/host.tif
inst/extdata/simple20x20/host_0s.tif
inst/extdata/simple20x20/host_0s_wsd.tif
inst/extdata/simple20x20/host_fullzeropoly.tif
inst/extdata/simple20x20/host_w_sd.tif
inst/extdata/simple20x20/host_w_sd2.tif
inst/extdata/simple20x20/infected_single.tif
inst/extdata/simple20x20/infected_wsd.tif
inst/extdata/simple20x20/infected_years.tif
inst/extdata/simple20x20/initial_infection.tif
inst/extdata/simple20x20/mask.tif
inst/extdata/simple20x20/movements.csv
inst/extdata/simple20x20/nodes.csv
inst/extdata/simple20x20/points.gpkg
inst/extdata/simple20x20/segments.csv
inst/extdata/simple20x20/treatments.tif
inst/extdata/simple2x2/coefficient_sd.tif
inst/extdata/simple2x2/critical_temp.tif
inst/extdata/simple2x2/critical_temp_all_below_threshold.tif
inst/extdata/simple2x2/critical_temp_diff_crs.tif
inst/extdata/simple2x2/critical_temp_diff_extent.tif
inst/extdata/simple2x2/critical_temp_diff_res.tif
inst/extdata/simple2x2/critical_temp_diff_xres.tif
inst/extdata/simple2x2/critical_temp_diff_yres.tif
inst/extdata/simple2x2/host.tif
inst/extdata/simple2x2/host_baylaurel.tif
inst/extdata/simple2x2/host_baylaurel_wsd.tif
inst/extdata/simple2x2/host_oak.tif
inst/extdata/simple2x2/host_oak_wsd.tif
inst/extdata/simple2x2/host_tanoak.tif
inst/extdata/simple2x2/host_tanoak_wsd.tif
inst/extdata/simple2x2/infected.csv
inst/extdata/simple2x2/infected.tif
inst/extdata/simple2x2/infected_baylaurel.tif
inst/extdata/simple2x2/infected_baylaurel_wsd.tif
inst/extdata/simple2x2/infected_oak.tif
inst/extdata/simple2x2/infected_oak_wsd.tif
inst/extdata/simple2x2/infected_tanoak.tif
inst/extdata/simple2x2/infected_tanoak_wsd.tif
inst/extdata/simple2x2/randoms.csv
inst/extdata/simple2x2/survival_rates.tif
inst/extdata/simple2x2/susceptible.tif
inst/extdata/simple2x2/temperature_coefficient.tif
inst/extdata/simple2x2/temperature_coefficient_days.tif
inst/extdata/simple2x2/temperature_coefficient_weeks.tif
inst/extdata/simple2x2/total_plants.tif
inst/extdata/simple2x2/total_plants_diff_res.tif
inst/extdata/simple2x2/total_plants_diff_xres.tif
inst/extdata/simple2x2/total_plants_diff_yres.tif
inst/extdata/simple2x2/total_plants_host_greater_than_infected.tif
inst/extdata/simple2x2/total_plants_with_crs.tif
inst/extdata/simple2x2/treatments.tif
inst/extdata/simple2x2/treatments_1_1.tif
inst/extdata/simple2x2/treatments_1_2.tif
inst/extdata/simple2x2/treatmentshalf.tif
inst/extdata/simple5x5/total_plants.tif
inst/extdata/simple5x5/total_plants_diff_res.tif
inst/extdata/simple5x5/total_plants_diff_xres.tif
inst/extdata/simple5x5/total_plants_diff_yres.tif
inst/include/PoPS.h
inst/include/PoPS_RcppExports.h
inst/include/actions.hpp
inst/include/anthropogenic_kernel.hpp
inst/include/cauchy_kernel.hpp
inst/include/competency_table.hpp
inst/include/config.hpp
inst/include/date.hpp
inst/include/deterministic_kernel.hpp
inst/include/environment.hpp
inst/include/environment_interface.hpp
inst/include/exponential_kernel.hpp
inst/include/exponential_power_kernel.hpp
inst/include/gamma_kernel.hpp
inst/include/generator_provider.hpp
inst/include/host_pool.hpp
inst/include/host_pool_interface.hpp
inst/include/hyperbolic_secant_kernel.hpp
inst/include/kernel.hpp
inst/include/kernel_base.hpp
inst/include/kernel_types.hpp
inst/include/logistic_kernel.hpp
inst/include/lognormal_kernel.hpp
inst/include/model.hpp
inst/include/model_type.hpp
inst/include/multi_host_pool.hpp
inst/include/natural_anthropogenic_kernel.hpp
inst/include/natural_kernel.hpp
inst/include/neighbor_kernel.hpp
inst/include/network.hpp
inst/include/network_kernel.hpp
inst/include/normal_distribution_with_uniform_fallback.hpp
inst/include/normal_kernel.hpp
inst/include/pest_host_table.hpp
inst/include/pest_pool.hpp
inst/include/power_law_kernel.hpp
inst/include/quarantine.hpp
inst/include/radial_kernel.hpp
inst/include/raster.hpp
inst/include/scheduling.hpp
inst/include/simulation.hpp
inst/include/soils.hpp
inst/include/spread_rate.hpp
inst/include/statistics.hpp
inst/include/switch_kernel.hpp
inst/include/treatments.hpp
inst/include/uniform_kernel.hpp
inst/include/utils.hpp
inst/include/von_mises_distribution.hpp
inst/include/weibull_kernel.hpp
man/PoPS_GIF_transparent.gif
man/PoPS_Logo.png
man/calibrate.Rd
man/configuration.Rd
man/pops.Rd
man/pops_model.Rd
man/pops_multirun.Rd
man/quantity_allocation_disagreement.Rd
man/validate.Rd
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
renv.lock
renv/.gitignore
renv/activate.R
renv/settings.dcf
src/.clang-format
src/.gitignore
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/pops.cpp
tests/testthat.R
tests/testthat/test-calibrate.R
tests/testthat/test-checks.R
tests/testthat/test-configuration.R
tests/testthat/test-helpers.R
tests/testthat/test-pops-multirun.R
tests/testthat/test-pops.r
tests/testthat/test-quantity_allocation_disagreement.R
tests/testthat/test-validate.R
vignettes/.gitignore
vignettes/setting-up-data.Rmd
