cellularFraction: Cellular fraction
In ndbrown6/CNtu: Copy Number tree utilities
cellularFraction R Documentation
Cellular fraction
Description
Computes the maximum likelihood estimate of cancer cell fractions given observed VAF
Usage
alpha_hat = cellularFraction(f_hat, qt, sq)
Arguments
f_hat
numeric vector of variant allele fractions where f_hat = 0 … 1
qt
numeric vector of integer estimates of total copy numbers
sq
numeric vector of integer estimates of mutated copy numbers
Value
Numeric vector of cancer cell fractions where alpha_hat = 0 … 1
Author(s)
David Brown
brownd7@mskcc.org
ndbrown6/CNtu documentation built on March 16, 2023, 1:01 a.m.
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| cellularFraction | R Documentation |
Cellular fraction
Description
Computes the maximum likelihood estimate of cancer cell fractions given observed VAF
Usage
alpha_hat = cellularFraction(f_hat, qt, sq)
Arguments
f_hat |
numeric vector of variant allele fractions where f_hat = 0 … 1 |
qt |
numeric vector of integer estimates of total copy numbers |
sq |
numeric vector of integer estimates of mutated copy numbers |
Value
Numeric vector of cancer cell fractions where alpha_hat = 0 … 1
Author(s)
David Brown
brownd7@mskcc.org
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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