extExpRSE: Extract Expression Matrix

In ndhutso/geneSummary: Summarize GEOquery data

Description

Extracts the gene expression matrix for RSE data

Usage

extExpRSE(data, geneSymbol=NA, long = FALSE)

Arguments

data	data imported using recount2
geneSymbol	the gene "name" or "symbol"
long	a boolean value entered for the data returned to be in a long format

Author(s)

Nicholas Hutson

Examples

download_study("SRP009615")
y <- file.path("SRP009615", 'rse_gene.Rdata')
load(y)
geneSymbol <- "TP53"
long <- TRUE
extExpRSE(rse_gene, geneSymbol, long)

ndhutso/geneSummary documentation built on Nov. 4, 2019, 8:43 p.m.