plot_model: Plot transcript_abundance object

Description Usage Arguments Value

View source: R/tq_visualization.R

Description

plot transcripts and masks

Usage

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plot_model(
  tq,
  gene_name = NULL,
  chrom = NULL,
  start = NULL,
  end = NULL,
  strand = NULL,
  bigwig_plus = NULL,
  bigwig_minus = NULL,
  ymax_bw = NULL,
  ymax_abundance = NULL
)

Arguments

tq

A transcript_quantifier-class object

gene_name

Name of your query gene. Only works if gene ids were given to the transcript_quantifier-class object

chrom

the chromosome of your query region (single value)

start

the start position of your query region (single value)

end

the end position of your query region (single value)

strand

the strand specificity of your query region (default: ANY)

bigwig_plus

the path to a bigwig for reads on the plus strand

bigwig_minus

the path to a bigwig for reads on the minus strand

ymax_bw

maximum value of y-axis for bw files when plotting

ymax_abundance

maximum value of y-axis for abundance when plotting

Value

plotted tracks of transcripts and masks of your query gene


ndukler/tuSelecter2 documentation built on Aug. 4, 2020, 1 p.m.