apply_bigwig_seqinfo: Apply seqinfo from bigwig to GRanges
In ndukler/tuSelecter2: Selecting transcript model using PRO-seq
Description
Usage
Arguments
Value
View source: R/data_handling.R
Description
Applies the seqinfo from a bigwig to any other object that has a valid seqinfo
method matches seqlevels, and prunes out of range entries
Usage
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apply_bigwig_seqinfo(
x,
bigwig_file,
drop_unused = TRUE,
pruning_mode = c("error", "coarse", "fine", "tidy")
)
Arguments
x
an object trhat has a seqinfo method (e.g. GRanges)
bigwig_file
a string pointing to a bigwig file
drop_unused
boolean drop unused seqlevels
pruning_mode
see pruning.mode from seqinfo
Value
a named vector of the polymerase ratios
ndukler/tuSelecter2 documentation built on Aug. 4, 2020, 1 p.m.
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Description Usage Arguments Value
View source: R/data_handling.R
Description
Applies the seqinfo from a bigwig to any other object that has a valid seqinfo
method matches seqlevels, and prunes out of range entries
Usage
1 2 3 4 5 6 | apply_bigwig_seqinfo(
x,
bigwig_file,
drop_unused = TRUE,
pruning_mode = c("error", "coarse", "fine", "tidy")
)
|
Arguments
x |
an object trhat has a |
bigwig_file |
a string pointing to a bigwig file |
drop_unused |
boolean drop unused seqlevels |
pruning_mode |
see |
Value
a named vector of the polymerase ratios
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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