coexpr_propr: Compute coexpression via propr::propr

In ne1s0n/MTGOsc: MTGO analysis applied to Single Cell data

Compute coexpression via propr::propr

Description

This function is a wrapper around propr::propr to compute coexpression starting from a Seurat dgCMatrix (from the @data field in a Seurat object), containing the expression data. This function returns only the @matrix field of the propr object.

Usage

coexpr_propr(geneExpression, verbose = FALSE, ...)

Arguments

geneExpression	a Seurat dgCMatrix (from the @data field in a Seurat object)
verbose	if TRUE the messages from propr::propr are not suppressed
...	extra parameters are passed to propr::propr

Value

the @matrix field of a propr object

ne1s0n/MTGOsc documentation built on April 20, 2022, 9:35 p.m.