Man pages for nesscoder/TimeCycle
TimeCycle: Topology Inspired MEthod for the Detection of Cycling Transcripts
| averageReps | Handles Sample Replicates in Single Time-Series |
| buildTakens_ndim | Generates Takens' Embedding For a Time-Series |
| computeLaplacianEmbedding | Computes the Laplacian Eigenmap For Dimension Reduction |
| computePersistence | Computes Persistence Scores For a Data.Frame of Time-Series... |
| detrend | Linearly Detrends a 'data.frame' of Gene Expression... |
| getFFT | Computes the Fast Fourier Transform of a Time-Series |
| getPersistence | Computes Persistence Scores For a Single Time-Series Across a... |
| getRepAvgedDataFrame | Handles Sample Replicates in a 'data.frame' of Time-Series |
| getTimeSpan | Computes Algorithm Run Time |
| imputeMissingData | Imputates Missing Time-Points in Data |
| matrixLaplacian | Computes Laplacian Eigenmaping |
| meanCenter | Mean Centers a 'data.frame' |
| movingAverage | Computes the Moving Average of a Single Time-Series |
| movingAverageDF | Computes the Moving Average By Row in a 'data.frame' of... |
| nullResampling | Generates a 'data.frame' of Resampled Time-Series for... |
| periodFinder | Estimates the period, amp, and phase of a 'data.frame' of... |
| preprocess_acf | Computes Time-Series Autocovariance Function |
| resampleTimeSeries | Generates a 'data.frame' of Resampled Time-Series |
| scaleTimeSeries | Scales a Time-Series |
| TimeCycle | Main TimeCycle Function |
| zhang2014 | Example data set of normalized microarray time-series... |
