periodFinder: Estimates the period, amp, and phase of a 'data.frame' of...
In nesscoder/TimeCycle: TimeCycle: Topology Inspired MEthod for the Detection of Cycling Transcripts
Description
Usage
Arguments
Value
See Also
Description
Estimates the period, amp, and phase of a data.frame of time-series via fast Fourier transform (FFT).
A model fit for the time-series is generated using the first 3 harmonics. The period, amp, and phase are
computed based on the aggregate fit.
Usage
1
Arguments
data
a data.frame of numeric gene expression over time (row = genes x col = ZT times).
Value
a data.frame of numeric period, amplitude, and phase estimates for each gene.
See Also
-
getFFT for FFT calculation.
-
detrend for linear detrending of time-series prior to periodFinder processing.
-
movingAverageDF for smoothing of time-series prior to periodFinder processing.
nesscoder/TimeCycle documentation built on June 29, 2021, 5:16 a.m.
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Description Usage Arguments Value See Also
Description
Estimates the period, amp, and phase of a data.frame of time-series via fast Fourier transform (FFT).
A model fit for the time-series is generated using the first 3 harmonics. The period, amp, and phase are
computed based on the aggregate fit.
Usage
1 |
Arguments
data |
a |
Value
a data.frame of numeric period, amplitude, and phase estimates for each gene.
See Also
-
getFFTfor FFT calculation. -
detrendfor linear detrending of time-series prior to periodFinder processing. -
movingAverageDFfor smoothing of time-series prior to periodFinder processing.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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