Description Usage Arguments Value Note Examples
This function calls fslmaths -s
to smooth an image and either
saves the image or returns an object of class nifti
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... |
additional arguments passed to |
outfile |
(character) resultant smoothed image name (optional) if not give, will be the stub of the filename then _sigma |
retimg |
(logical) return image of class nifti |
file |
(character or nifti) image to be smoothed |
sigma |
(numeric) sigma (in mm) of Gaussian kernel for smoothing |
mask |
(character) optional mask given for image |
smooth_mask |
(logical) Smooth mask? If TRUE, the masked image will be divided by the smoothed mask. |
smoothed_mask |
(character or nifti) If specified and
|
reorient |
(logical) If retimg, should file be reoriented when read in?
Passed to |
intern |
(logical) to be passed to |
verbose |
(logical) print out command before running |
Result from system command, depends if intern is TRUE or FALSE.
Functions with underscores have different defaults and will return an output filename, so to be used for piping
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