Description Usage Arguments Note Examples
This function calls the readnii
function after
calling rpi_orient_file
to force RPI orientation.
1 2 3 |
file |
file name of the NIfTI file. |
... |
Arguments to pass to |
verbose |
print diagnostics, passed to |
'readrpi2' uses 'RNifti' to ensure the reading orientation
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 | if (have.fsl()){
print(fsl_version())
in_ci <- function() {
nzchar(Sys.getenv("CI"))
}
if (in_ci()) {
destfile = tempfile(fileext = ".nii.gz")
url = paste0("https://ndownloader.figshare.com/",
"files/18068546")
old_url = paste0("https://github.com/muschellij2/",
"Neurohacking/files/3454385/113-01-MPRAGE2.nii.gz")
dl = tryCatch(download.file(url,
destfile = destfile))
if (inherits(dl, "try-error") || dl != 0) {
dl = download.file(old_url, destfile = destfile)
}
res = readrpi(destfile)
}
}
|
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