reverse_rpi_orient: Reverse Reorientation an Image to RPI orientation

In neuroconductor-devel/fslr: Wrapper Functions for 'FSL' ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB')

Description

This function uses fslswapdim to reorient an image

Usage

reverse_rpi_orient(
  file,
  convention = c("NEUROLOGICAL", "RADIOLOGICAL"),
  orientation,
  verbose = TRUE
)

reverse_rpi_orient_file(
  file,
  convention = c("NEUROLOGICAL", "RADIOLOGICAL"),
  orientation,
  verbose = TRUE
)

reverse_rpi_orient2(
  file,
  convention = c("NEUROLOGICAL", "RADIOLOGICAL"),
  orientation,
  verbose = TRUE
)

reverse_rpi_orient_file2(
  file,
  convention = c("NEUROLOGICAL", "RADIOLOGICAL"),
  orientation,
  verbose = TRUE
)

Arguments

file	Object of class nifti or character path
convention	Convention of original image (usually from rpi_orient)
orientation	Vector of length 3 from original image (usually from rpi_orient)
verbose	print diagnostic messages

Value

Object of class nifti

Note

'reverse_rpi_orient2' and 'reverse_rpi_orient_file2' uses 'RNifti' to ensure the reading orientation

neuroconductor-devel/fslr documentation built on May 6, 2021, 1:44 p.m.