Files in neuroconductor-devel/spant

MR Spectroscopy Analysis Tools

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DESCRIPTION

NAMESPACE

NEWS.md R/abfit.R R/amp_scaling.R R/basis_set.R R/benchmark.R R/data.R R/dicom_reader.R R/fit_display.R R/fitting.R R/gsl_functions.R R/image_reg.R R/interactive_plotting.R R/mol_parameters.R R/mrs_data_display.R R/mrs_data_io.R R/mrs_data_proc.R R/mrs_read_dicom.R R/mrs_read_ima.R R/mrs_read_lcm_raw.R R/mrs_read_list_data.R R/mrs_read_nifti.R R/mrs_read_paravis.R R/mrs_read_pfile.R R/mrs_read_rda.R R/mrs_read_spar_sdat.R R/mrs_read_twix.R R/mrs_read_varian.R R/mrs_write_nifti.R R/pnnls.R R/precomp.R R/pulse_sequences.R R/pulse_shapes.R R/qm_simulation.R R/rats.R R/spant.R R/svs_batch_fit.R R/tdsr.R R/utils.R R/varpro.R R/varpro_3_para.R README.Rmd README.md

_pkgdown.yml

cran-comments.md

data/spant_mpress_drift.rda

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index.Rmd

inst/WORDLIST

inst/extdata/philips_spar_sdat_WS.SDAT

inst/extdata/philips_spar_sdat_WS.SPAR

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man/figures/logo.png

man/fit_amps.Rd man/fit_diags.Rd man/fit_mrs.Rd man/fit_res2csv.Rd man/fp_phase.Rd man/fp_phase_correct.Rd man/fp_scale.Rd man/fs.Rd man/ft_shift.Rd man/ft_shift_mat.Rd man/gen_F.Rd man/gen_F_xy.Rd man/get_1h_brain_basis_paras.Rd man/get_1h_brain_basis_paras_v1.Rd man/get_1h_brain_basis_paras_v2.Rd man/get_1h_brain_basis_paras_v3.Rd man/get_2d_psf.Rd man/get_acq_paras.Rd man/get_dyns.Rd man/get_even_dyns.Rd man/get_fh_dyns.Rd man/get_fit_map.Rd man/get_fp.Rd man/get_guassian_pulse.Rd man/get_lcm_cmd.Rd man/get_metab.Rd man/get_mol_names.Rd man/get_mol_paras.Rd man/get_mrs_affine.Rd man/get_mrsi2d_seg.Rd man/get_mrsi_voi.Rd man/get_mrsi_voxel.Rd man/get_mrsi_voxel_xy_psf.Rd man/get_odd_dyns.Rd man/get_ref.Rd man/get_seg_ind.Rd man/get_sh_dyns.Rd man/get_slice.Rd man/get_subset.Rd man/get_svs_voi.Rd man/get_td_amp.Rd man/get_tqn_cmd.Rd man/get_uncoupled_mol.Rd man/get_voi_cog.Rd man/get_voi_seg.Rd man/get_voi_seg_psf.Rd man/get_voxel.Rd man/grid_shift_xy.Rd man/gridplot.Rd man/gridplot.mrs_data.Rd man/hsvd.Rd man/hsvd_filt.Rd man/hsvd_vec.Rd man/hz.Rd man/ift_shift.Rd man/ift_shift_mat.Rd man/image.mrs_data.Rd man/img2kspace_xy.Rd man/int_spec.Rd man/interleave_dyns.Rd man/inv_even_dyns.Rd man/inv_odd_dyns.Rd man/is.def.Rd man/is_fd.Rd man/kspace2img_xy.Rd man/l2_reg.Rd man/lb.Rd man/lw2alpha.Rd man/lw2beta.Rd man/mask_dyns.Rd man/mask_xy.Rd man/mask_xy_mat.Rd man/mat2mrs_data.Rd man/max_mrs.Rd man/max_mrs_interp.Rd man/mean.mrs_data.Rd man/mean_dyn_blocks.Rd man/mean_dyn_pairs.Rd man/mean_dyns.Rd man/median_dyns.Rd man/mrs_data2basis.Rd man/mrs_data2mat.Rd man/mrs_data2vec.Rd man/mvfftshift.Rd man/mvifftshift.Rd man/n2coord.Rd man/nifti_flip_lr.Rd man/norm_mrs.Rd man/ortho3.Rd man/ortho3_inter.Rd man/peak_info.Rd man/pg_extrap_xy.Rd man/phase.Rd man/plot.fit_result.Rd man/plot.mrs_data.Rd man/plot_bc.Rd man/plot_slice_fit.Rd man/plot_slice_fit_inter.Rd man/plot_slice_map.Rd man/plot_slice_map_inter.Rd man/plot_voi_overlay.Rd man/plot_voi_overlay_seg.Rd man/ppm.Rd man/precomp.Rd man/print.fit_result.Rd man/print.mrs_data.Rd man/qn_states.Rd man/rats.Rd man/re_weighting.Rd man/read_basis.Rd man/read_ima_coil_dir.Rd man/read_ima_dyn_dir.Rd man/read_lcm_coord.Rd man/read_mrs.Rd man/read_mrs_tqn.Rd man/read_siemens_txt_hdr.Rd man/read_tqn_fit.Rd man/read_tqn_result.Rd man/reexports.Rd man/rep_array_dim.Rd man/rep_dyn.Rd man/rep_mrs.Rd man/resample_img.Rd man/resample_voi.Rd man/reslice_to_mrs.Rd man/reson_table2mrs_data.Rd man/rm_dyns.Rd man/scale_amp_molal_pvc.Rd man/scale_amp_molar.Rd man/scale_amp_ratio.Rd man/scale_amp_water_ratio.Rd man/sd.Rd man/sd.mrs_data.Rd man/seconds.Rd man/seq_cpmg_ideal.Rd man/seq_mega_press_ideal.Rd man/seq_press_ideal.Rd man/seq_pulse_acquire.Rd man/seq_pulse_acquire_31p.Rd man/seq_slaser_ideal.Rd man/seq_spin_echo_ideal.Rd man/seq_spin_echo_ideal_31p.Rd man/seq_steam_ideal.Rd man/set_def_acq_paras.Rd man/set_lcm_cmd.Rd man/set_lw.Rd man/set_precomp_mode.Rd man/set_precomp_verbose.Rd man/set_ref.Rd man/set_td_pts.Rd man/set_tqn_cmd.Rd man/shift.Rd man/sim_basis.Rd man/sim_basis_1h_brain.Rd man/sim_basis_1h_brain_press.Rd man/sim_basis_tqn.Rd man/sim_brain_1h.Rd man/sim_mol.Rd man/sim_noise.Rd man/sim_resonances.Rd man/spant-package.Rd man/spant_abfit_benchmark.Rd man/spant_mpress_drift.Rd man/spin_sys.Rd man/spm_pve2categorical.Rd man/ssp.Rd man/stackplot.Rd man/stackplot.fit_result.Rd man/stackplot.mrs_data.Rd man/sum_coils.Rd man/sum_dyns.Rd man/svs_1h_brain_analysis.Rd man/svs_1h_brain_batch_analysis.Rd man/td2fd.Rd man/td_conv_filt.Rd man/tdsr.Rd man/varpro_3_para_opts.Rd man/varpro_opts.Rd man/vec2mrs_data.Rd man/write_basis.Rd man/write_basis_tqn.Rd man/write_mrs.Rd man/write_mrs_nifti.Rd man/zero_nzoc.Rd man/zf.Rd man/zf_xy.Rd

spant.Rproj

src/.gitignore

src/init.c

src/lsei.f

src/pnnls.f

tests/testthat.R

tests/testthat/abfit_res_coarse.rds

tests/testthat/abfit_res_default.rds

tests/testthat/abfit_res_fine.rds

tests/testthat/abfit_res_no_optim.rds

tests/testthat/abfit_sim_mrs_data.rds

tests/testthat/abfit_sim_res.rds

tests/testthat/def_basis.rds

tests/testthat/test_fitting.R tests/testthat/test_nifti.R tests/testthat/test_preproc.R tests/testthat/test_qm_sim.R tic.R

vignettes/.gitignore

vignettes/abfit-baseline-opts.Rmd vignettes/spant-basis-simulation.Rmd vignettes/spant-intro.Rmd vignettes/spant-metabolite-simulation.Rmd vignettes/spant-preprocessing.Rmd

neuroconductor-devel/spant documentation built on May 18, 2021, 9:12 p.m.