ortho3: Display an orthographic projection plot of a nifti object.

In neuroconductor-releases/spant: MR Spectroscopy Analysis Tools

Description

Display an orthographic projection plot of a nifti object.

Usage

ortho3(
  underlay,
  overlay = NULL,
  xyz = NULL,
  zlim = NULL,
  zlim_ol = NULL,
  alpha = 1,
  col_ol = viridisLite::viridis(64),
  orient_lab = TRUE,
  rescale = 1,
  crosshairs = TRUE,
  ch_lwd = 1,
  colourbar = TRUE,
  bg = "black",
  mar = c(0, 0, 0, 0),
  smallplot = c(0.5, 0.52, 0.1, 0.4)
)

Arguments

underlay	underlay image to be shown in grayscale.
overlay	optional overlay image.
xyz	x, y, z slice coordinates to display.
zlim	underlay intensity limits.
zlim_ol	overlay intensity limits.
alpha	transparency of overlay.
col_ol	colour palette of overlay.
orient_lab	display orientation labels (default TRUE).
rescale	rescale factor for the underlay and overlay images.
crosshairs	display the crosshairs (default TRUE).
ch_lwd	crosshair linewidth.
colourbar	display a colourbar for the overlay (default TRUE).
bg	plot background colour.
mar	plot margins.
smallplot	smallplot option for positioning the colourbar.

neuroconductor-releases/spant documentation built on Jan. 1, 2021, 11:42 a.m.