afni_3dNwarpApply: AFNI 3dNwarpApply function

In neuroconductor/afnir: Wrapper Functions for 'AFNI' (Analysis of Functional 'NeuroImages')

Description

Wrapper for AFNI 3dNwarpApply function

Usage

afni_3dNwarpApply(file, warp, fixed = NULL, interpolator = c("wsinc5",
  "cubic", "linear", "NN", "quintic"), invert_warp = FALSE,
  outfile = NULL, retimg = TRUE, opts = "", ...)

afni_warp_apply(...)

NwarpApply(...)

Arguments

file	nifti object or NIfTI filename to register to fixed image
warp	list of nifti objects or NIfTI filenames of warps to be applied
fixed	nifti object or NIfTI filename of the target space, used to determine the output grid/resolution. If not specified, then it will use that of file. You can also specify this as "WARP" to use the warps as the destination resolutione/etc.
interpolator	interpolation method to use during matching process NN - nearest neighbor.
invert_warp	After the warp specified in warp is computed, invert it. If the input warp would take a dataset from space A to B, then the inverted warp will do the reverse.
outfile	Output filename (should not have an extension). This should be the same length as file
retimg	Should an image be returned (TRUE) or a filename?
opts	Additional options passed to 3dNwarpApply
...	additional arguments to afni_3dAFNItoNIFTI

Value

Output filename of the brik

neuroconductor/afnir documentation built on May 22, 2021, 9:54 a.m.