showinf | R Documentation |
Displaying images and metadata
showinf( file, pixel_data = FALSE, series = NULL, range = NULL, crop = NULL, autoscale = FALSE, ome_xml = FALSE, opts = c("-no-upgrade", "-novalid"), debug = FALSE, verbose = TRUE, run = TRUE ) showinf.help() bf_showinf( file, pixel_data = FALSE, series = NULL, range = NULL, crop = NULL, autoscale = FALSE, ome_xml = FALSE, opts = c("-no-upgrade", "-novalid"), debug = FALSE, verbose = TRUE, run = TRUE ) bf_show_info( file, pixel_data = FALSE, series = NULL, range = NULL, crop = NULL, autoscale = FALSE, ome_xml = FALSE, opts = c("-no-upgrade", "-novalid"), debug = FALSE, verbose = TRUE, run = TRUE ) showinf_version() bf_meta_subset(file)
file |
File to display |
pixel_data |
Should the image/pixel data be read in?
If |
series |
All images in the input file are converted by default. To convert only one series, set this to a numeric |
range |
To convert images between certain indices (inclusive), set 0 to first |
crop |
of the format x,y,width,height. The (x, y) coordinate (0, 0) is the upper-left corner of the image; x + width must be less than or equal to the image width and y + height must be less than or equal to the image height. |
autoscale |
Adjusts the display range to the minimum and maximum pixel values. |
ome_xml |
should this populate OME-XML metadata |
opts |
Additional options to pass to |
debug |
Enables debugging output if more information is needed |
verbose |
Should the command be printed |
run |
Should the command be run? Useful for diagnostics. |
The output file name
file = "~/Downloads/2017_08_03__0006.czi" if (file.exists(file)) { res = showinf(file = file, run = FALSE) res } showinf_version()
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