plot.fmripvalue: Visualize fMRI p-value maps

In neuroconductor/fmri: Analysis of fMRI Experiments

Description

Visualize objects created by function fmri.pvalue

Usage

## S3 method for class 'fmripvalue'
plot(x, template = NULL, mask = NULL,
      view = c("axial", "coronal", "sagittal", "orthographic"),
      slices = NULL, ncol = 1, nrow = 1, center = NULL, ...)

Arguments

x	object of class 'fmripvalue'
template	Anatomical image of same origin and direction as pvalue map in x$pvalue.
mask	optional brain mask
view	Either 'orthographic' or one of 'axial', 'coronal' or 'sagittal'
slices	If view != "orthographic" vector of slice numbers to use. If not provided the ncol*nrow slices with strongest signals are selected
ncol	If view != "orthographic" number of slices per row
nrow	If view != "orthographic" number of rows in display.
center	If view == "orthographic" center of orthographic view. If not provided the center is chosen to provide maximal information.
...	additional parameters (not evaluated)

Value

list with components

comp1	slices, numbers refer to spm
comp2	center, numbers refer to spm

Author(s)

Joerg Polzehl [e-mail]

See Also

fmri.pvalue, ~~~

neuroconductor/fmri documentation built on May 20, 2021, 4:28 p.m.