make_ggseg3d_2_ggseg: Turn ggseg3d-atlas to ggseg

In neuroconductor/ggsegExtra: Extra Utilities for the 'ggseg'-Plotting Tool

Description

Function will create a dataframe based on a ggseg3d atlas, based on the contours of each segment.

Usage

make_ggseg3d_2_ggseg(
  ggseg3d_atlas = ggseg3d::dk_3d,
  steps = 1:6,
  output_dir = tempdir(),
  tolerance = 0,
  smoothness = 10,
  cleanup = FALSE,
  ncores = parallel::detectCores() - 2
)

Arguments

ggseg3d_atlas	object of class ggseg3d-atlas
steps	number of 1:6 of which steps to run through
output_dir	output directory path
tolerance	tolerance during vertex reduction st_simplify
smoothness	smoothing factor, argument to smooth
cleanup	logical to toggle removal of all intermediary files
ncores	number of cores for parallel processing (default numcores-2)

Value

data.frame ready for manual cleaning

neuroconductor/ggsegExtra documentation built on Aug. 18, 2020, 4:45 p.m.