t1_segment: MALF Tissue and Structure Segmentation

In neuroconductor/smri.process: Processing of Structural Magnetic Resonance Imaging

Description

MALF Tissue and Structure Segmentation

Usage

t1_segment(t1, outdir = tempdir(), num_templates = 35,
  interpolator = "genericLabel", typeofTransform = "SyNAggro",
  verbose = TRUE, malf_prob_function = "staple_prob",
  malf_label_function = "mode", force_registration = FALSE, ...)

Arguments

t1	T1-weighted image/filename
outdir	Output directory
num_templates	Number of templates to use for MALF
interpolator	interpolation done in registration
typeofTransform	Transformation to align the templates to the T1
verbose	Print diagnostic messages
malf_prob_function	Function for MALF combination for probability.
malf_label_function	Function for MALF combination for labeling.
force_registration	Should the MALF registrations be re-run if they already exist?
...	additional options to pass to malf

Value

Object of class nifti

neuroconductor/smri.process documentation built on Sept. 29, 2020, 2:32 p.m.